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产酸克雷伯菌4-羟基肉桂酸脱羧酶(PAD)基因的鉴定。

Identification of the 4-hydroxycinnamate decarboxylase (PAD) gene of Klebsiella oxytoca.

作者信息

Uchiyama Hirofumi, Hashidoko Yasuyuki, Kuriyama Yuhki, Tahara Satoshi

机构信息

Division of Applied Bioscience, Research Faculty of Agriculture, Hokkaido University, Sapporo, Japan.

出版信息

Biosci Biotechnol Biochem. 2008 Jan;72(1):116-23. doi: 10.1271/bbb.70496. Epub 2008 Jan 7.

Abstract

A 7.1-kbp DNA fragment isolated from a wild strain of Klebsiella oxytoca was sequenced, leading to the identification of 10 open-reading frames (ORFs), including a 504-bp Pad gene. The Pad gene of the Gram-negative bacterium was subsequently expressed in Escherichia coli as a chimeric Pad. The deduced amino acid (AA) sequence of the Pad gene from wild-type K. oxytoca showed approximately 50% homology to those of other bacterial PADs from Gram-positive bacilli plus a coccus. These data and a genomic library search of some gamma-proteobacteria, including E. coli and Vibrio sp., indicated that PAD of K. oxytoca is a member of the bacterial PAD family characteristic of Gram-negative bacteria. Using Pad-specific PCR primers designed from the Gram-negative bacterial Pad of K. oxytoca, Pad genes of two further strains of K. oxytoca, another wild isolate and JCM 1665 and two PAD-positive Enterobacter spp. were successfully amplified for specific Pad detection.

摘要

从产酸克雷伯菌野生菌株中分离出一个7.1千碱基对的DNA片段并进行测序,从而鉴定出10个开放阅读框(ORF),其中包括一个504碱基对的Pad基因。随后,该革兰氏阴性菌的Pad基因在大肠杆菌中作为嵌合Pad表达。野生型产酸克雷伯菌Pad基因推导的氨基酸(AA)序列与来自革兰氏阳性杆菌和球菌的其他细菌PAD的序列显示出约50%的同源性。这些数据以及对包括大肠杆菌和弧菌属在内的一些γ-变形菌的基因组文库搜索表明,产酸克雷伯菌的PAD是革兰氏阴性细菌特有的细菌PAD家族的一员。使用根据产酸克雷伯菌革兰氏阴性细菌Pad设计的Pad特异性PCR引物,成功扩增出另外两株产酸克雷伯菌、另一野生分离株和JCM 1665以及两株PAD阳性肠杆菌属细菌的Pad基因,用于特异性Pad检测。

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