Müller E Matthias, Hub Jochen S, Grubmüller Helmut, de Groot Bert L
Department of Theoretical and Computational Biophysics, Max-Planck Institute for Biophysical Chemistry, Am Fassberg 11, Göttingen, Germany.
Pflugers Arch. 2008 Jul;456(4):663-9. doi: 10.1007/s00424-007-0422-0. Epub 2008 Jan 15.
Excessive water uptake through aquaporins can be life threatening, and disregulation of water permeability causes many diseases. Therefore, reversible aquaporin inhibitors are highly desired. In this paper, we identified the binding site for tetraethylammonium (TEA) of the membrane water channel aquaporin-1 by a combined molecular docking and molecular dynamics simulation approach. The binding site identified from docking studies was independently confirmed with an unbiased molecular dynamics simulation of an aquaporin tetramer embedded in a lipid membrane, surrounded by a 100-mM tetraethylammonium solution in water. A third independent assessment of the binding site was obtained by umbrella sampling simulations. These simulations, in addition, revealed a binding affinity of more than 17 kJ/mol, corresponding to an IC(50) value of << 3 mM. Finally, we observed in our simulations a 50% reduction of the water flux in the presence of TEA, in agreement with water permeability measurements on aquaporin expressed in oocytes. These results confirm TEA as a putative lead for an aquaporin-1 inhibitor.
通过水通道蛋白过度摄取水分可能会危及生命,而水通透性的失调会引发多种疾病。因此,人们迫切需要可逆性水通道蛋白抑制剂。在本文中,我们通过分子对接和分子动力学模拟相结合的方法,确定了膜水通道水通道蛋白-1的四乙铵(TEA)结合位点。对接研究确定的结合位点,通过对嵌入脂质膜的水通道蛋白四聚体进行无偏分子动力学模拟得到了独立验证,该四聚体被水中100 mM的四乙铵溶液包围。通过伞形抽样模拟获得了对结合位点的第三次独立评估。此外,这些模拟还揭示了超过17 kJ/mol的结合亲和力,对应于远低于3 mM的半数抑制浓度(IC50)值。最后,我们在模拟中观察到,在存在TEA的情况下水通量降低了50%,这与在卵母细胞中表达的水通道蛋白的水通透性测量结果一致。这些结果证实TEA是一种潜在的水通道蛋白-1抑制剂先导物。