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迈向非共价分子相互作用电子薛定谔方程的精确解:全球分布式量子蒙特卡罗计算

Toward the exact solution of the electronic Schrödinger equation for noncovalent molecular interactions: worldwide distributed quantum monte carlo calculations.

作者信息

Korth Martin, Lüchow Arne, Grimme Stefan

机构信息

Organisch-Chemisches Institut, Universität Münster, Corrensstrasse 40, D-48149 Münster, Germany.

出版信息

J Phys Chem A. 2008 Mar 13;112(10):2104-9. doi: 10.1021/jp077592t. Epub 2008 Jan 18.

Abstract

Quantum Monte Carlo (QMC) calculations on the stacked (st) and Watson/Crick (wc) bound adenine/thymine (A/T) and cytosine/guanine (C/G) DNA base pair complexes were made possible with the first large scale distributed computing project in ab initio quantum chemistry, Quantum Monte Carlo at Home (QMC@HOME). The results for the interaction energies (wc-A/T = 15.7 kcal/mol, wc-C/G = 30.2 kcal/mol, st-A/T = 13.1 kcal/mol, st-C/G = 19.6 kcal/mol) are in very good agreement with the best known coupled-cluster based estimates. The accuracy of these values is further supported by calculations on the S22 benchmark set of noncovalently bound systems, for which we obtain a small mean absolute deviation of 0.68 kcal/mol. Our results support previous claims that the stacking energies are of comparable magnitude to the interactions of the commonly discussed hydrogen-bonded motif. Furthermore, we show that QMC can serve as an advantageous alternative to conventional wave function methods for large noncovalently bound systems. We also investigated in detail all technical parameters of the QMC simulations and recommend a careful optimization procedure of the Jastrow correlation factors in order to obtain numerically stable and reliable results.

摘要

通过量子化学从头算领域的首个大规模分布式计算项目“居家量子蒙特卡罗”(QMC@HOME),对堆叠(st)和沃森/克里克(wc)结合的腺嘌呤/胸腺嘧啶(A/T)以及胞嘧啶/鸟嘌呤(C/G)DNA碱基对复合物进行了量子蒙特卡罗(QMC)计算。相互作用能的计算结果(wc - A/T = 15.7千卡/摩尔,wc - C/G = 30.2千卡/摩尔,st - A/T = 13.1千卡/摩尔,st - C/G = 19.6千卡/摩尔)与最知名的基于耦合簇的估计值非常吻合。对非共价键合体系的S22基准集进行的计算进一步支持了这些值的准确性,为此我们得到的平均绝对偏差很小,为0.68千卡/摩尔。我们的结果支持了先前的观点,即堆积能的大小与通常讨论的氢键基序的相互作用相当。此外,我们表明,对于大型非共价键合体系,QMC可以作为传统波函数方法的一种有利替代方法。我们还详细研究了QMC模拟的所有技术参数,并推荐对雅斯特罗关联因子进行仔细的优化程序,以获得数值稳定且可靠的结果。

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