• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

QTLNetwork:实验群体复杂性状遗传结构的定位与可视化

QTLNetwork: mapping and visualizing genetic architecture of complex traits in experimental populations.

作者信息

Yang Jian, Hu Chengcheng, Hu Han, Yu Rongdong, Xia Zhen, Ye Xiuzi, Zhu Jun

机构信息

Institute of Bioinformatics, Zhejiang University, Hangzhou, China, 310029.

出版信息

Bioinformatics. 2008 Mar 1;24(5):721-3. doi: 10.1093/bioinformatics/btm494. Epub 2008 Jan 17.

DOI:10.1093/bioinformatics/btm494
PMID:18202029
Abstract

SUMMARY

QTLNetwork is a software package for mapping and visualizing the genetic architecture underlying complex traits for experimental populations derived from a cross between two inbred lines. It can simultaneously map quantitative trait loci (QTL) with individual effects, epistasis and QTL-environment interaction. Currently, it is able to handle data from F(2), backcross, recombinant inbred lines and double-haploid populations, as well as populations from specific mating designs (immortalized F(2) and BC(n)F(n) populations). The Windows version of QTLNetwork was developed with a graphical user interface. Alternatively, the command-line versions have the facility to be run in other prevalent operating systems, such as Linux, Unix and MacOS.

AVAILABILITY

http://ibi.zju.edu.cn/software/qtlnetwork.

摘要

摘要

QTLNetwork是一个软件包,用于对由两个近交系杂交产生的实验群体复杂性状的遗传结构进行定位和可视化。它可以同时定位具有个体效应、上位性和QTL-环境互作的数量性状基因座(QTL)。目前,它能够处理来自F(2)、回交、重组自交系和双单倍体群体的数据,以及来自特定交配设计的群体(永生化F(2)和BC(n)F(n)群体)。QTLNetwork的Windows版本是通过图形用户界面开发的。另外,命令行版本可以在其他流行的操作系统(如Linux、Unix和MacOS)中运行。

可用性

http://ibi.zju.edu.cn/software/qtlnetwork 。

相似文献

1
QTLNetwork: mapping and visualizing genetic architecture of complex traits in experimental populations.QTLNetwork:实验群体复杂性状遗传结构的定位与可视化
Bioinformatics. 2008 Mar 1;24(5):721-3. doi: 10.1093/bioinformatics/btm494. Epub 2008 Jan 17.
2
Mapping the genetic architecture of complex traits in experimental populations.绘制实验群体中复杂性状的遗传结构图谱。
Bioinformatics. 2007 Jun 15;23(12):1527-36. doi: 10.1093/bioinformatics/btm143. Epub 2007 Apr 25.
3
QGene 4.0, an extensible Java QTL-analysis platform.QGene 4.0,一个可扩展的Java数量性状基因座分析平台。
Bioinformatics. 2008 Dec 1;24(23):2788-9. doi: 10.1093/bioinformatics/btn523. Epub 2008 Oct 21.
4
FunMap: functional mapping of complex traits.FunMap:复杂性状的功能图谱
Bioinformatics. 2004 Jul 22;20(11):1808-11. doi: 10.1093/bioinformatics/bth156. Epub 2004 Feb 26.
5
Using mating designs to uncover QTL and the genetic architecture of complex traits.利用交配设计揭示数量性状基因座和复杂性状的遗传结构。
Heredity (Edinb). 2006 Feb;96(2):139-49. doi: 10.1038/sj.hdy.6800763.
6
QTLNetworkR: an interactive R package for QTL visualization.QTLNetworkR:一个用于 QTL 可视化的交互式 R 包。
J Zhejiang Univ Sci B. 2010 Jul;11(7):512-5. doi: 10.1631/jzus.B0900384.
7
Genetic architecture of complex traits in plants.植物复杂性状的遗传结构
Curr Opin Plant Biol. 2007 Apr;10(2):156-61. doi: 10.1016/j.pbi.2007.01.003. Epub 2007 Feb 8.
8
QTL mapping for plant architecture traits in upland cotton using RILs and SSR markers.利用重组自交系和SSR标记对陆地棉株型性状进行QTL定位
Yi Chuan Xue Bao. 2006 Feb;33(2):161-70. doi: 10.1016/S0379-4172(06)60035-8.
9
Mapping QTLs with epistatic effects and QTL x environment interactions for plant height using a doubled haploid population in cultivated wheat.利用栽培小麦的双单倍体群体定位具有上位性效应和QTL×环境互作的株高QTL
J Genet Genomics. 2008 Feb;35(2):119-27. doi: 10.1016/S1673-8527(08)60017-X.
10
A nearest-neighboring-end algorithm for genetic mapping.一种用于基因定位的最近邻端算法。
Bioinformatics. 2005 Apr 15;21(8):1579-91. doi: 10.1093/bioinformatics/bti164. Epub 2004 Nov 25.

引用本文的文献

1
regulated flowering time and seed weight.调控开花时间和种子重量。
Front Plant Sci. 2025 Aug 11;16:1640116. doi: 10.3389/fpls.2025.1640116. eCollection 2025.
2
Integration of QTL mapping and GWAS reveals the complicated genetic architecture of chemical composition traits in tobacco leaves.数量性状基因座定位与全基因组关联研究的整合揭示了烟草叶片化学成分性状复杂的遗传结构。
Front Plant Sci. 2025 Jun 25;16:1616591. doi: 10.3389/fpls.2025.1616591. eCollection 2025.
3
Genetic modulation of protein expression in rat brain.大鼠脑中蛋白质表达的基因调控
iScience. 2025 Feb 21;28(3):112079. doi: 10.1016/j.isci.2025.112079. eCollection 2025 Mar 21.
4
Review on GPU accelerated methods for genome-wide SNP-SNP interactions.全基因组SNP-SNP相互作用的GPU加速方法综述。
Mol Genet Genomics. 2024 Dec 29;300(1):10. doi: 10.1007/s00438-024-02214-6.
5
GWASTool: A web pipeline for detecting SNP-phenotype associations.GWASTool:一种用于检测单核苷酸多态性与表型关联的网络流程。
Fundam Res. 2024 Mar 22;4(4):761-769. doi: 10.1016/j.fmre.2024.03.005. eCollection 2024 Jul.
6
Multi-environment QTL mapping identifies major genetic loci influencing soybean main stem node architecture.多环境QTL定位鉴定出影响大豆主茎节结构的主要基因位点。
PeerJ. 2024 Nov 26;12:e18539. doi: 10.7717/peerj.18539. eCollection 2024.
7
Map-based cloning of LPD, a major gene positively regulates leaf prickle development in eggplant.基于图谱的茄子刺突发育主效正调控基因 LPD 的克隆。
Theor Appl Genet. 2024 Sep 9;137(10):216. doi: 10.1007/s00122-024-04726-6.
8
Application of CRISPR/Cas9 system to knock out GluB gene for developing low glutelin rice mutant.应用CRISPR/Cas9系统敲除GluB基因以培育低谷蛋白水稻突变体。
Bot Stud. 2024 Sep 3;65(1):27. doi: 10.1186/s40529-024-00432-0.
9
Dissection of genetic architecture of nine hazardous component traits of mainstream smoke in tobacco ( L.).烟草(L.)主流烟气中九种有害成分性状的遗传结构剖析
Front Plant Sci. 2024 May 8;15:1358953. doi: 10.3389/fpls.2024.1358953. eCollection 2024.
10
An integrated QTL mapping and transcriptome sequencing provides further molecular insights and candidate genes for stem strength in rapeseed (Brassica napus L.).整合 QTL 作图和转录组测序为油菜(甘蓝型油菜)茎秆强度提供了进一步的分子见解和候选基因。
Theor Appl Genet. 2024 Jan 31;137(2):38. doi: 10.1007/s00122-023-04535-3.