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用一组双歧检索表鉴定弧菌属菌种。

Identification of Vibrio spp. with a set of dichotomous keys.

作者信息

Noguerola I, Blanch A R

机构信息

Department of Microbiology, University of Barcelona, Barcelona, Spain.

出版信息

J Appl Microbiol. 2008 Jul;105(1):175-85. doi: 10.1111/j.1365-2672.2008.03730.x. Epub 2008 Jan 31.

Abstract

AIMS

To define a binary biochemical key for the identification of all recognized Vibrio spp.

METHODS AND RESULTS

A matrix of phenotypical results was developed based on the previous taxonomical studies and the first description manuscripts. A unification of results from various sources was also performed to integrate different taxonomical studies within the same data matrix. Established criteria for selecting the optimal set of tests yielded the highest discrimination, as well as the lowest number of tests. An initial identification key was defined using arginine dihydrolase, lysine decarboxylase and ornithine decarboxylase tests, as well as defining eight different clusters. This key leads each cluster to a secondary key for species identification. Most of Vibrio spp. presented an identification threshold of 100%.

CONCLUSIONS

A new set of biochemical keys has been determined provides a scheme for the rapid identification of clinical and environmental species of Vibrio. No more than 14 are needed for even the most complicated identifications. This newly defined set of keys updates and improves similar findings published in previous studies.

SIGNIFICANCE AND IMPACT OF THE STUDY

These biochemical keys are designed for use in routine applications, particularly in environmental and clinical studies involving a high number of isolates.

摘要

目的

确定一种用于鉴定所有已识别弧菌属物种的二元生化鉴定方法。

方法与结果

基于先前的分类学研究和首次描述手稿,构建了一个表型结果矩阵。还对来自不同来源的结果进行了统一,以将不同的分类学研究整合到同一数据矩阵中。通过既定标准选择最佳测试集,以实现最高的区分度以及最少的测试数量。使用精氨酸双水解酶、赖氨酸脱羧酶和鸟氨酸脱羧酶测试定义了一个初始鉴定方法,并划分了八个不同的簇。该方法引导每个簇进入用于物种鉴定的二级鉴定方法。大多数弧菌属物种的鉴定阈值为100%。

结论

已确定一套新的生化鉴定方法,为快速鉴定临床和环境中的弧菌物种提供了一个方案。即使是最复杂的鉴定,所需测试也不超过14项。这一新定义的鉴定方法更新并改进了先前研究中发表的类似结果。

研究的意义与影响

这些生化鉴定方法设计用于常规应用,特别是在涉及大量分离株的环境和临床研究中。

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