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底物-蛋白质氢键在细胞色素P450cin区域选择性羟基化控制中的关键作用。

The critical role of substrate-protein hydrogen bonding in the control of regioselective hydroxylation in p450cin.

作者信息

Meharenna Yergalem T, Slessor Kate E, Cavaignac Sonia M, Poulos Thomas L, De Voss James J

机构信息

Department of Molecular Biology and Biochemistry, University of California, Irvine, California 92697-3900, USA.

出版信息

J Biol Chem. 2008 Apr 18;283(16):10804-12. doi: 10.1074/jbc.M709722200. Epub 2008 Feb 12.

Abstract

Cytochrome P450cin (CYP176A1) is a bacterial P450 isolated from Citrobacter braakii that catalyzes the hydroxylation of cineole to (S)-6beta-hydroxycineole. This initiates the biodegradation of cineole, enabling C. braakii to live on cineole as its sole source of carbon and energy. P450cin lacks the almost universally conserved threonine residue believed to be involved in dioxygen activation and instead contains an asparagine at this position (Asn-242). To investigate the role of Asn-242 in P450cin catalysis, it was converted to alanine, and the resultant mutant was characterized. The characteristic CO-bound spectrum and spectrally determined K(D) for substrate binding were unchanged in the mutant. The x-ray crystal structures of the substrate-free and -bound N242A mutant were determined and show that the only significant change is in a reorientation of the substrate such that (R)-6alpha-hydroxycineole should be a major product. Molecular dynamics simulations of both wild type and mutant are consistent with the change in regio- and stereoselectivity predicted from the crystal structure. The mutation has only a modest effect on enzyme activity and on the diversion of the NADPH-reducing equivalent toward unproductive peroxide formation. Product profile analysis shows that (R)-6alpha-hydroxycineole is the main product, which is consistent with the crystal structure. These results demonstrate that Asn-242 is not a functional replacement for the conserved threonine in other P450s but, rather, is critical in controlling regioselective substrate oxidation.

摘要

细胞色素P450cin(CYP176A1)是一种从布氏柠檬酸杆菌中分离出的细菌细胞色素P450,它催化桉叶油素羟基化为(S)-6β-羟基桉叶油素。这启动了桉叶油素的生物降解过程,使布氏柠檬酸杆菌能够以桉叶油素作为唯一的碳源和能源生存。P450cin缺乏被认为参与双氧激活的几乎普遍保守的苏氨酸残基,取而代之的是在该位置含有一个天冬酰胺(Asn-242)。为了研究Asn-242在P450cin催化中的作用,将其转化为丙氨酸,并对所得突变体进行了表征。突变体中底物结合的特征性CO结合光谱和光谱测定的K(D)没有变化。测定了无底物和结合底物的N242A突变体的X射线晶体结构,结果表明唯一显著的变化是底物的重新定向,使得(R)-6α-羟基桉叶油素应该是主要产物。野生型和突变体的分子动力学模拟与晶体结构预测的区域和立体选择性变化一致。该突变对酶活性以及NADPH还原当量向非生产性过氧化物形成的转移只有适度的影响。产物谱分析表明(R)-6α-羟基桉叶油素是主要产物,这与晶体结构一致。这些结果表明,Asn-242不是其他细胞色素P450中保守苏氨酸的功能替代物,而是在控制区域选择性底物氧化方面至关重要。

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