Hennig Janosch, Bresell Anders, Sandberg Martina, Hennig Klaus D M, Wahren-Herlenius Marie, Persson Bengt, Sunnerhagen Maria
Molecular Biotechnology, IFM, Campus Valla, Linköping University, SE-581 83 Linköping, Sweden.
J Mol Biol. 2008 Mar 21;377(2):431-49. doi: 10.1016/j.jmb.2008.01.005. Epub 2008 Jan 11.
Ro52 is a major autoantigen that is targeted in the autoimmune disease Sjögren syndrome and belongs to the tripartite motif (TRIM) protein family. Disease-related antigenic epitopes are mainly found in the coiled-coil domain of Ro52, but one such epitope is located in the Zn(2+)-binding region, which comprises an N-terminal RING followed by a B-box, separated by a approximately 40-residue linker peptide. In the present study, we extend the structural, biophysical, and immunological knowledge of this RING-B-box linker (RBL) by employing an array of methods. Our bioinformatic investigations show that the RBL sequence motif is unique to TRIM proteins and can be classified into three distinct subtypes. The RBL regions of all three subtypes are as conserved as their known flanking domains, and all are predicted to comprise an amphipathic helix. This helix formation is confirmed by circular dichroism spectroscopy and is dependent on the presence of the RING. Immunological studies show that the RBL is part of a conformation-dependent epitope, and its antigenicity is likewise dependent on a structured RING domain. Recombinant Ro52 RING-RBL exists as a monomer in vitro, and binding of two Zn(2+) increases its stability. Regions stabilized by Zn(2+) binding are identified by limited proteolysis and matrix-assisted laser desorption/ionization mass spectrometry. Furthermore, the residues of the RING and linker that interact with each other are identified by analysis of protection patterns, which, together with bioinformatic and biophysical data, enabled us to propose a structural model of the RING-RBL based on modeling and docking experiments. Sequence similarities and evolutionary sequence patterns suggest that the results obtained from Ro52 are extendable to the entire TRIM protein family.
Ro52是自身免疫性疾病干燥综合征中的主要自身抗原,属于三重基序(TRIM)蛋白家族。与疾病相关的抗原表位主要存在于Ro52的卷曲螺旋结构域中,但其中一个这样的表位位于锌离子结合区域,该区域由一个N端的RING结构域、一个B盒以及一个约40个氨基酸的连接肽组成,二者由连接肽隔开。在本研究中,我们通过一系列方法扩展了对这个RING-B盒连接区(RBL)的结构、生物物理和免疫学认识。我们的生物信息学研究表明,RBL序列基序是TRIM蛋白所特有的,可分为三种不同的亚型。所有三种亚型的RBL区域与其已知的侧翼结构域一样保守,并且均预测包含一个两亲性螺旋。圆二色光谱证实了这种螺旋的形成,且其依赖于RING结构域的存在。免疫学研究表明,RBL是构象依赖性表位的一部分,其抗原性同样依赖于一个结构化的RING结构域。重组Ro52 RING-RBL在体外以单体形式存在,两个锌离子的结合增加了其稳定性。通过有限蛋白酶解和基质辅助激光解吸/电离质谱法确定了由锌离子结合稳定的区域。此外,通过保护模式分析确定了RING和连接区中相互作用的残基,这些结果与生物信息学和生物物理数据一起,使我们能够基于建模和对接实验提出RING-RBL的结构模型。序列相似性和进化序列模式表明,从Ro52获得的结果可扩展至整个TRIM蛋白家族。