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肽中β-氨基酸残基的构象:含非手性残基1-氨基环己烷乙酸(β3,3Ac6c)的肽的X射线衍射研究

Conformations of beta-amino acid residues in peptides: X-ray diffraction studies of peptides containing the achiral residue 1-aminocyclohexaneacetic acid, beta3,3Ac6c.

作者信息

Vasudev Prema G, Rai Rajkishor, Shamala Narayanaswamy, Balaram Padmanabhan

机构信息

Department of Physics, Indian Institute of Science, Bangalore 560 012, India.

出版信息

Biopolymers. 2008;90(2):138-50. doi: 10.1002/bip.20957.

Abstract

The conformational preferences of the 3,3-disubstituted beta-amino acid residue, 1-aminocyclohexaneacetic acid (beta3,3Ac6c) have been investigated by determining the crystal structures of the parent amino acid, the hydrochloride derivative, 10 protected derivatives and di and tripeptides. The symmetrical cyclohexyl substituent at the beta-position restricts the values of the torsion angles phi (N--C(beta)) and theta (C(beta)--C(alpha)) to approximately gauche values (+/-60 degrees ). Relatively few intramolecularly hydrogen bonded conformations are observed. In the dipeptide Boc-beta(3,3)Ac6c-beta(3,3)Ac6c-NHMe a C6 hydrogen bond is observed. In Piv-Pro-beta(3,3)Ac6c-NHMe a C11 hydrogen bonded hybrid alphabeta turn is characterized. In a majority of cases the amino group occupies the axial position in the cyclohexane ring. The conformations observed are compared with crystallographically observed structures for other beta-residues, including beta(2,2)Ac6c.

摘要

通过测定母体氨基酸、盐酸盐衍生物、10种保护衍生物以及二肽和三肽的晶体结构,对3,3 - 二取代β - 氨基酸残基1 - 氨基环己烷乙酸(β3,3Ac6c)的构象偏好进行了研究。β位上对称的环己基取代基将扭转角φ(N - C(β))和θ(C(β) - C(α))的值限制在大约gauche值(±60°)。观察到相对较少的分子内氢键构象。在二肽Boc - β(3,3)Ac6c - β(3,3)Ac6c - NHMe中观察到一个C6氢键。在Piv - Pro - β(3,3)Ac6c - NHMe中,一个C11氢键连接的杂合αβ转角得以表征。在大多数情况下,氨基占据环己烷环中的轴向位置。将观察到的构象与其他β - 残基(包括β(2,2)Ac6c)的晶体学观察结构进行了比较。

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