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基于塑料基底的集成等速堆积与凝胶电泳及检测动态范围的变化

Integrated isotachophoretic stacking and gel electrophoresis on a plastic substrate and variations in detection dynamic range.

作者信息

Lin Chun-Che, Hsu Bi-Kei, Chen Shu-Hui

机构信息

Department of Chemistry, National Cheng Kung University, Tainan, Taiwan.

出版信息

Electrophoresis. 2008 Mar;29(6):1228-36. doi: 10.1002/elps.200700479.

DOI:10.1002/elps.200700479
PMID:18288669
Abstract

In this study, we demonstrated an integrated ITP-gel electrophoresis (GE) device on a plastic substrate, in which 50 nL of samples could be hydrodynamically or electrokinetically injected and enriched by ITP into narrow bands and then subsequently introduced into a homogeneous GE channel for separation and detection. This microchip design rendered a simple introduction scheme for creating sandwiched stacking buffer system and flexibilities in choosing separation and stacking buffers independently. We used gel sieving buffers which compositions were different from those for stacking buffers to separate DNA and protein molecules based on sizing mechanism. Compared to conventional microchip GE, the sensitivity of microchip ITP-GE was estimated to increase by one to two orders of magnitude based on the dilution factor of the injected sample and the S/N ratio detected from the electropherogram. Moreover, it is interesting to note that ITP stacking leads to a preferential enhancement for analytes with lower concentrations compared to those with higher concentrations. Therefore, a reduction in the detection dynamic range for ITP-GE was gained. We demonstrated that ITP-GE could lead to 2-4-folds of reduction in the signal dynamic range for two PCR products in a mixture. Such advantage is demonstrated to be useful for the detection of two products amplified from a multiplex PCR in which one product is poorly amplified compared to the other.

摘要

在本研究中,我们展示了一种在塑料基底上的集成等速电泳-凝胶电泳(GE)装置,其中50 nL样品可通过流体动力学或电动方式进样,并通过等速电泳富集到窄带中,随后引入均匀的GE通道进行分离和检测。这种微芯片设计为创建夹心堆积缓冲系统提供了一种简单的进样方案,并且在独立选择分离缓冲液和堆积缓冲液方面具有灵活性。我们使用了组成与堆积缓冲液不同的凝胶筛分缓冲液,基于尺寸筛分机制分离DNA和蛋白质分子。与传统的微芯片GE相比,基于进样样品的稀释倍数和从电泳图中检测到的信噪比,微芯片等速电泳-凝胶电泳(ITP-GE)的灵敏度估计提高了一到两个数量级。此外,有趣的是,与高浓度分析物相比,等速电泳堆积对低浓度分析物有优先增强作用。因此,等速电泳-凝胶电泳(ITP-GE)的检测动态范围有所降低。我们证明,对于混合物中的两种PCR产物,等速电泳-凝胶电泳(ITP-GE)可使信号动态范围降低2至4倍。这种优势被证明对于检测多重PCR扩增的两种产物很有用,其中一种产物的扩增效果比另一种差。

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引用本文的文献

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Western blotting using microchip electrophoresis interfaced to a protein capture membrane.采用微芯片电泳与蛋白质捕获膜接口的蛋白质印迹法。
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Transport and separation of micron sized particles at isotachophoretic transition zones.在等速电泳转换区对微米级颗粒的传输和分离。
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