Ertas Gokhan, Gulcur H Ozcan, Tunaci Mehtap, Osman Onur, Ucan Osman Nuri
Biomedical Engineering Institute, Bogazici University, 34342, Bebek, Istanbul, Turkey.
Med Phys. 2008 Jan;35(1):195-205. doi: 10.1118/1.2805477.
Cellular neural networks (CNNs) are massively parallel cellular structures with learning abilities. They can be used to realize complex image processing applications efficiently and in almost real time. In this preliminary study, we propose a novel, robust, and fully automated system based on CNNs to facilitate lesion localization in contrast-enhanced MR mammography, a difficult task requiring the processing of a large number of images with attention paid to minute details. The data set consists of 1170 slices containing one precontrast and five postcontrast bilateral axial MR mammograms from 39 patients with 37 malignant and 39 benign mass lesions acquired using a 1.5 Tesla MR scanner with the following parameters: 3D FLASH sequence, TR/TE 9.80/4.76 ms, flip angle 250, slice thickness 2.5 mm, and 0.625 x 0.625 mm2 in-plane resolution. Six hundred slices with 21 benign and 25 malignant lesions of this set are used for training the CNNs; the remaining data are used for test purposes. The breast region of interest is first segmented from precontrast images using four 2D CNNs connected in cascade, specially designed to minimize false detections due to muscles, heart, lungs, and thoracic cavity. To identify deceptively enhancing regions, a 3D nMITR map of the segmented breast is computed and converted into binary form. During this process tissues that have low degrees of enhancements are discarded. To boost lesions, this binary image is processed by a 3D CNN with a control template consisting of three layers of 11 x 11 cells and a fuzzy c-partitioning output function. A set of decision rules extracted empirically from the training data set based on volume and 3D eccentricity features is used to make final decisions and localize lesions. The segmentation algorithm performs well with high average precision, high true positive volume fraction, and low false positive volume fraction with an overall performance of 0.93 +/- 0.05, 0.96 +/- 0.04, and 0.03 +/- 0.05, respectively (training: 0.93 +/- 0.04, 0.94 +/- 0.04, and 0.02 +/- 0.03; test: 0.93 +/- 0.05, 0.97 +/- 0.03, and 0.05 +/- 0.06). The lesion detection performance of the system is quite satisfactory; for the training data set the maximum detection sensitivity is 100% with false-positive detections of 0.28/lesion, 0.09/slice, and 0.65/case; for the test data set the maximum detection sensitivity is 97% with false-positive detections of 0.43/lesion, 0.11/slice, and 0.68/case. On the average, for a detection sensitivity of 99%, the overall performance of the system is 0.34/lesion, 0.10/slice, and 0.67/case. The system introduced does not require prior information concerning breast anatomy; it is robust and exceptionally effective for detecting breast lesions. The use of CNNs, fuzzy c-partitioning, volume, and 3D eccentricity criteria reduces false-positive detections due to artifacts caused by highly enhanced blood vessels, nipples, and normal parenchyma and artifacts from vascularized tissues in the chest wall due to oversegmentation. We hope that this system will facilitate breast examinations, improve the localization of lesions, and reduce unnecessary mastectomies, especially due to missed multicentric lesions and that almost real-time processing speeds achievable by direct hardware implementations will open up new clinical applications, such as making feasible quasi-automated MR-guided biopsies and acquisition of additional postcontrast lesion images to improve morphological characterizations.
细胞神经网络(CNNs)是具有学习能力的大规模并行细胞结构。它们可用于高效且几乎实时地实现复杂的图像处理应用。在这项初步研究中,我们提出了一种基于细胞神经网络的新颖、稳健且完全自动化的系统,以促进对比增强乳腺磁共振成像中的病变定位,这是一项艰巨的任务,需要处理大量图像并关注细微细节。数据集由1170个切片组成,包含来自39名患者的一张造影前和五张造影后双侧轴向乳腺磁共振图像,其中有37个恶性和39个良性肿块病变,使用1.5特斯拉磁共振扫描仪,参数如下:3D FLASH序列,TR/TE 9.80/4.76毫秒,翻转角250°,层厚2.5毫米,平面分辨率0.625×0.625平方毫米。该数据集中有21个良性病变和25个恶性病变的600个切片用于训练细胞神经网络;其余数据用于测试。首先使用四个级联的二维细胞神经网络从造影前图像中分割出感兴趣的乳腺区域,这些网络经过专门设计,以尽量减少因肌肉、心脏、肺部和胸腔导致的误检测。为了识别具有欺骗性增强的区域,计算分割后乳腺的三维nMITR图并将其转换为二进制形式。在此过程中,增强程度低的组织被舍弃。为了增强病变,该二进制图像由一个三维细胞神经网络处理,其控制模板由三层11×11个细胞和一个模糊c-划分输出函数组成。基于体积和三维偏心率特征从训练数据集中凭经验提取的一组决策规则用于做出最终决策并定位病变。分割算法表现良好,平均精度高、真阳性体积分数高、假阳性体积分数低,总体性能分别为0.93±0.05、0.96±0.04和0.03±0.05(训练:0.93±0.04、0.94±0.04和0.02±0.03;测试:0.93±0.05、0.97±0.03和0.05±0.06)。该系统的病变检测性能相当令人满意;对于训练数据集,最大检测灵敏度为100%,假阳性检测为0.28/病变、0.09/切片和0.65/病例;对于测试数据集,最大检测灵敏度为97%,假阳性检测为0.43/病变、0.11/切片和0.68/病例。平均而言,对于99%的检测灵敏度,该系统的总体性能为0.34/病变、0.10/切片和0.67/病例。所介绍的系统不需要有关乳腺解剖结构的先验信息;它对于检测乳腺病变具有稳健性且异常有效。细胞神经网络、模糊c-划分、体积和三维偏心率标准的使用减少了因高度增强的血管、乳头和正常实质引起的伪影以及因过度分割导致的胸壁血管化组织的伪影所产生的假阳性检测。我们希望该系统将促进乳腺检查,改善病变定位,并减少不必要的乳房切除术,特别是由于漏诊多中心病变导致的情况,并且直接硬件实现可达到的几乎实时处理速度将开辟新的临床应用,例如使准自动化磁共振引导活检可行,并获取额外的造影后病变图像以改善形态学特征。