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DNA序列与染色体结构域的组织

DNA sequence and the organization of chromosomal domains.

作者信息

Straub Tobias, Becker Peter B

机构信息

Adolf-Butenandt-Institut and Center for Integrated Protein Science Munich, Ludwig Maximilian Universität, Schillerstrasse 44, D-80336 Munich, Germany.

出版信息

Curr Opin Genet Dev. 2008 Apr;18(2):175-80. doi: 10.1016/j.gde.2008.01.001. Epub 2008 Mar 4.

DOI:10.1016/j.gde.2008.01.001
PMID:18295474
Abstract

The combination of chromatin structure and the organization of chromosomes in eukaryotic nuclei affects many genome functions. Distinct functional states of genes ranging from 'highly active' to 'silenced' correlate with particular nucleosome arrangements, histone variants, histone modifications, and interactions of non-histone regulators. Transcription factors that recognize and bind specific DNA sequences recruit chromatin modulators to specific genes via protein interactions. However, little is known about how chromosomal domains or entire chromosomes are targeted to implement particular chromatin structures and activity states. Here we discuss emerging concepts of how DNA sequence can contribute to chromatin organization at the domain level. Inspiration and motivation for this discourse comes from the unresolved question of how X chromosomes are identified for dosage compensation.

摘要

染色质结构与真核细胞核中染色体的组织方式相结合,会影响许多基因组功能。基因从“高度活跃”到“沉默”的不同功能状态与特定的核小体排列、组蛋白变体、组蛋白修饰以及非组蛋白调节因子的相互作用相关。识别并结合特定DNA序列的转录因子通过蛋白质相互作用将染色质调节剂招募至特定基因。然而,对于染色体结构域或整条染色体如何被靶向以实现特定的染色质结构和活性状态,我们知之甚少。在此,我们讨论有关DNA序列如何在结构域水平上促进染色质组织的新兴概念。这一论述的灵感和动机来自于X染色体如何被识别以进行剂量补偿这一尚未解决的问题。

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1
DNA sequence and the organization of chromosomal domains.DNA序列与染色体结构域的组织
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2
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Form and function of dosage-compensated chromosomes--a chicken-and-egg relationship.剂量补偿染色体的形式与功能——一个先有鸡还是先有蛋的问题。
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引用本文的文献

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Chromosoma. 2020 Mar;129(1):25-44. doi: 10.1007/s00412-019-00728-2. Epub 2019 Dec 9.
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Dosage Compensation in Drosophila-a Model for the Coordinate Regulation of Transcription.果蝇中的剂量补偿——转录协同调控的模型
Genetics. 2016 Oct;204(2):435-450. doi: 10.1534/genetics.115.185108.
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Ectopic assembly of heterochromatin in Drosophila melanogaster triggered by transposable elements.
转座元件触发果蝇异染色质的异位组装。
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Uncoupling of genomic and epigenetic signals in the maintenance and inheritance of heterochromatin domains in fission yeast.在裂殖酵母中异染色质结构域的维持和遗传过程中,基因组和表观遗传信号的解耦。
Genetics. 2012 Feb;190(2):549-57. doi: 10.1534/genetics.111.137083. Epub 2011 Dec 5.
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Evidence of activity-specific, radial organization of mitotic chromosomes in Drosophila.有丝分裂染色体在果蝇中具有活性特异性的放射状组织的证据。
PLoS Biol. 2011 Jan 11;9(1):e1000574. doi: 10.1371/journal.pbio.1000574.
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Dosage compensation and the global re-balancing of aneuploid genomes.剂量补偿与非整倍体基因组的全球再平衡。
Genome Biol. 2010;11(8):216. doi: 10.1186/gb-2010-11-8-216. Epub 2010 Aug 26.
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A sequence motif enriched in regions bound by the Drosophila dosage compensation complex.富含果蝇剂量补偿复合物结合区域的序列基序。
BMC Genomics. 2010 Mar 12;11:169. doi: 10.1186/1471-2164-11-169.
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The DNA binding CXC domain of MSL2 is required for faithful targeting the Dosage Compensation Complex to the X chromosome.MSL2 的 DNA 结合 CXC 结构域对于将剂量补偿复合物准确靶向 X 染色体是必需的。
Nucleic Acids Res. 2010 Jun;38(10):3209-21. doi: 10.1093/nar/gkq026. Epub 2010 Feb 5.
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The dosage compensation complex shapes the conformation of the X chromosome in Drosophila.剂量补偿复合体塑造了果蝇中X染色体的构象。
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