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双相情感障碍的全基因组关联研究。

Whole-genome association study of bipolar disorder.

作者信息

Sklar P, Smoller J W, Fan J, Ferreira M A R, Perlis R H, Chambert K, Nimgaonkar V L, McQueen M B, Faraone S V, Kirby A, de Bakker P I W, Ogdie M N, Thase M E, Sachs G S, Todd-Brown K, Gabriel S B, Sougnez C, Gates C, Blumenstiel B, Defelice M, Ardlie K G, Franklin J, Muir W J, McGhee K A, MacIntyre D J, McLean A, VanBeck M, McQuillin A, Bass N J, Robinson M, Lawrence J, Anjorin A, Curtis D, Scolnick E M, Daly M J, Blackwood D H, Gurling H M, Purcell S M

机构信息

Center for Human Genetic Research, Massachusetts General Hospital, Boston, MA 02114, USA.

出版信息

Mol Psychiatry. 2008 Jun;13(6):558-69. doi: 10.1038/sj.mp.4002151. Epub 2008 Mar 4.

Abstract

We performed a genome-wide association scan in 1461 patients with bipolar (BP) 1 disorder, 2008 controls drawn from the Systematic Treatment Enhancement Program for Bipolar Disorder and the University College London sample collections with successful genotyping for 372,193 single nucleotide polymorphisms (SNPs). Our strongest single SNP results are found in myosin5B (MYO5B; P=1.66 x 10(-7)) and tetraspanin-8 (TSPAN8; P=6.11 x 10(-7)). Haplotype analysis further supported single SNP results highlighting MYO5B, TSPAN8 and the epidermal growth factor receptor (MYO5B; P=2.04 x 10(-8), TSPAN8; P=7.57 x 10(-7) and EGFR; P=8.36 x 10(-8)). For replication, we genotyped 304 SNPs in family-based NIMH samples (n=409 trios) and University of Edinburgh case-control samples (n=365 cases, 351 controls) that did not provide independent replication after correction for multiple testing. A comparison of our strongest associations with the genome-wide scan of 1868 patients with BP disorder and 2938 controls who completed the scan as part of the Wellcome Trust Case-Control Consortium indicates concordant signals for SNPs within the voltage-dependent calcium channel, L-type, alpha 1C subunit (CACNA1C) gene. Given the heritability of BP disorder, the lack of agreement between studies emphasizes that susceptibility alleles are likely to be modest in effect size and require even larger samples for detection.

摘要

我们对1461例双相1型障碍患者进行了全基因组关联扫描,对照组为2008例,取自双相障碍系统治疗强化项目及伦敦大学学院样本库,成功对372,193个单核苷酸多态性(SNP)进行了基因分型。我们发现肌球蛋白5B(MYO5B;P = 1.66×10⁻⁷)和四跨膜蛋白8(TSPAN8;P = 6.11×10⁻⁷)的单SNP结果最为显著。单倍型分析进一步支持了单SNP结果,突出了MYO5B、TSPAN8和表皮生长因子受体(MYO5B;P = 2.04×10⁻⁸,TSPAN8;P = 7.57×10⁻⁷,EGFR;P = 8.36×10⁻⁸)。为进行重复验证,我们在基于家系的美国国立精神卫生研究所样本(n = 409个三联体)和爱丁堡大学病例对照样本(n = 365例病例,351例对照)中对304个SNP进行了基因分型,经多重检验校正后未提供独立的重复验证。将我们最强的关联结果与1868例双相障碍患者和2938例对照的全基因组扫描结果进行比较,这些患者和对照作为威康信托病例对照联合体的一部分完成了扫描,结果表明电压依赖性钙通道L型α1C亚基(CACNA1C)基因内的SNP信号一致。鉴于双相障碍的遗传性,研究之间缺乏一致性强调了易感性等位基因的效应大小可能较小,需要更大的样本量才能检测到。

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