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利用固态13C核磁共振实验和蛋白质数据库的统计分析对弹性蛋白模拟物(LGGVG)6的结构洞察

Structural insights into the elastin mimetic (LGGVG)6 using solid-state 13C NMR experiments and statistical analysis of the PDB.

作者信息

Kumashiro Kristin K, Ohgo Kosuke, Niemczura Walter P, Onizuka Allen K, Asakura Tetsuo

机构信息

Department of Chemistry, University of Hawaii, Honolulu, HI 96822, USA.

出版信息

Biopolymers. 2008 Aug;89(8):668-79. doi: 10.1002/bip.20984.

Abstract

Elastin is a crosslinked hydrophobic protein found in abundance in vertebrate tissue and is the source of elasticity in connective tissues and blood vessels. The repeating polypeptide sequences found in the hydrophobic domains of elastin have been the focus of many studies that attempt to understand the function of the native protein on a molecular scale. In this study, the central residues of the (LGGVG)(6) elastin mimetic are targeted. Using a combination of a statistical analysis based on structures in the Brookhaven Protein Data Bank (PDB), 1D cross-polarization magic-angle-spinning (CPMAS) NMR spectroscopy, and 2D off-magic-angle-spinning (OMAS) spin-diffusion experiments, it is determined that none of the residues are found in a singular regular, highly ordered structure. Instead, like the poly(VPGVG) elastin mimetics, there are multiple conformations and significant disorder. Furthermore, the conformational ensembles are not reflective of proteins generally, as in the PDB, suggesting that the structure distributions in elastin mimetics are unique to these peptides and are a salient feature of the functional model of the native protein.

摘要

弹性蛋白是一种在脊椎动物组织中大量存在的交联疏水蛋白,是结缔组织和血管弹性的来源。弹性蛋白疏水结构域中发现的重复多肽序列一直是许多研究的重点,这些研究试图在分子水平上理解天然蛋白质的功能。在本研究中,以(LGGVG)(6)弹性蛋白模拟物的中心残基为目标。结合基于布鲁克海文蛋白质数据库(PDB)中结构的统计分析、一维交叉极化魔角旋转(CPMAS)核磁共振光谱和二维非魔角旋转(OMAS)自旋扩散实验,确定没有一个残基存在于单一规则、高度有序的结构中。相反,与聚(VPGVG)弹性蛋白模拟物一样,存在多种构象且无序程度很高。此外,构象集合并不像PDB中那样反映一般蛋白质,这表明弹性蛋白模拟物中的结构分布是这些肽所特有的,是天然蛋白质功能模型的一个显著特征。

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