Suppr超能文献

基于密度泛函理论对8-氧代鸟嘌呤转化为胍基乙内酰脲和螺亚氨基二氢乙内酰脲的机制进行的探索。

An exploration of mechanisms for the transformation of 8-oxoguanine to guanidinohydantoin and spiroiminodihydantoin by density functional theory.

作者信息

Munk Barbara H, Burrows Cynthia J, Schlegel H Bernhard

机构信息

Department of Chemistry, Wayne State University, Detroit, Michigan 48202, USA.

出版信息

J Am Chem Soc. 2008 Apr 16;130(15):5245-56. doi: 10.1021/ja7104448. Epub 2008 Mar 21.

Abstract

The potential energy surface for formation of 2-amino-5-hydroxy-7,9-dihydropurine-6,8-dione (5-OH-OG), guanidinohydantoin (Gh) and spiroiminodihydantoin (Sp) from 8-oxoguanine (8-oxoG) has been mapped out using B3LYP density functional theory, the aug-cc-pVTZ and 6-31+G(d,p) basis sets and the IEF-polarizable continuum model (PCM) solvation model. Three pathways for formation of 5-OH-OG from 8-oxoG were evaluated: (A) stepwise loss of two electrons and two protons to form the quinonoid intermediate 2-amino-7,9-dihydro-purine-6,8-dione (8-oxoG(ox)) followed by hydration; (B) stepwise loss of two electrons and one proton and net addition of hydroxide, in which the key step is nucleophilic addition to the 8-oxoG radical cation; and (C) stepwise loss of one electron and one proton and addition of hydroxyl radical to the 8-oxoG radical cation. The data suggest that all three pathways are energetically feasible mechanisms for the formation of 5-OH-OG, however, Pathway A may be kinetically favored over Pathway B. Although lower in energy, Pathway C may be of limited biological significance since it depends on the local concentration of hydroxyl radical. Pathways for hydrolysis and decarboxylation of 5-OH-OG to form Gh via either a carboxylic acid or substituted carbamic acid intermediate have been evaluated with the result that cleavage of the N1-C6 bond is clearly favored over that of the C5-C6 bond. Formation of Sp from 5-OH-OG via stepwise proton transfer and acyl migration or ring opening followed by proton transfer and ring closure have also been explored and suggest that deprotonation of the hydroxyl group facilitates a 1,2 acyl shift. Results of the calculations are consistent with experimental studies showing dependence of the Gh/Sp product ratio on pH. Under neutral and basic conditions, the data predict that formation of Sp is kinetically favored over the pathways for formation of Gh. Under acidic conditions, Gh is predicted to be the kinetically favored product.

摘要

利用B3LYP密度泛函理论、aug-cc-pVTZ和6-31+G(d,p)基组以及IEF-极化连续介质模型(PCM)溶剂化模型,绘制了由8-氧代鸟嘌呤(8-oxoG)形成2-氨基-5-羟基-7,9-二氢嘌呤-6,8-二酮(5-OH-OG)、胍基乙内酰脲(Gh)和螺亚氨基乙内酰脲(Sp)的势能面。评估了由8-oxoG形成5-OH-OG的三条途径:(A)逐步失去两个电子和两个质子以形成醌型中间体2-氨基-7,9-二氢嘌呤-6,8-二酮(8-oxoG(ox)),然后水合;(B)逐步失去两个电子和一个质子并净添加氢氧根,其中关键步骤是亲核加成到8-oxoG自由基阳离子上;以及(C)逐步失去一个电子和一个质子并将羟基自由基加成到8-oxoG自由基阳离子上。数据表明,所有三条途径都是形成5-OH-OG的能量上可行的机制,然而,途径A在动力学上可能比途径B更有利。尽管能量较低,但途径C可能具有有限的生物学意义,因为它取决于羟基自由基的局部浓度。评估了5-OH-OG通过羧酸或取代氨基甲酸中间体水解和脱羧形成Gh的途径,结果表明N1-C6键的断裂明显比C5-C6键的断裂更有利。还探索了5-OH-OG通过逐步质子转移和酰基迁移或开环然后质子转移和闭环形成Sp的过程,结果表明羟基的去质子化促进了1,2-酰基转移。计算结果与实验研究一致,实验研究表明Gh/Sp产物比例对pH的依赖性。在中性和碱性条件下,数据预测形成Sp在动力学上比形成Gh的途径更有利。在酸性条件下,预测Gh是动力学上有利的产物。

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验