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肽中泛音振动的构象依赖性:模型二肽中的酰胺-I模式

Conformational dependence of anharmonic vibrations in peptides: amide-I modes in model dipeptide.

作者信息

Wang Jianping

机构信息

Beijing National Laboratory for Molecular Sciences, Molecular Reaction Dynamics Laboratory, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100080, People's Republic of China.

出版信息

J Phys Chem B. 2008 Apr 17;112(15):4790-800. doi: 10.1021/jp710641x. Epub 2008 Mar 26.

Abstract

The conformational dependence of a set of anharmonic vibrational parameters for the amide-I modes in peptides has been examined at the level of Hartree-Fock theory. By using glycine dipeptide as a model molecule, the phi-psi maps of diagonal and off-diagonal anharmonicities, local mode mixing angle, zero-order local mode frequencies, as well as intermode coupling, were calculated, and all were found to exhibit certain conformational sensitivities. The characteristics of the phi-psi maps of the diagonal and off-diagonal anharmonicities were found to be complementary to each other, and the latter was found to correlate well with that of the mixing angle, reflecting the fact that these anharmonic parameters are interconnected and all determined by the same set of underlying anharmonic force field. The mean values of the diagonal and off-diagonal anharmonicities were found to be 15.7 cm(-1) and 9.9 cm(-1) respectively. The mean value for the two local mode frequency differences was estimated to be 9.7 cm(-1), showing a nondegenerate local mode picture. For significant peptide conformations, the calculated anharmonic parameters were found to be in reasonable agreement with values obtained at the level of density functional theory as well as values obtained with recent two-dimensional infrared experiments.

摘要

在哈特里-福克理论水平上,研究了肽中酰胺-I模式的一组非谐振动参数的构象依赖性。以甘氨酸二肽为模型分子,计算了对角和非对角非谐性、局域模式混合角、零阶局域模式频率以及模式间耦合的φ-ψ图,发现所有这些图都表现出一定的构象敏感性。发现对角和非对角非谐性的φ-ψ图的特征相互补充,并且发现后者与混合角的图相关性良好,这反映了这些非谐参数是相互关联的,并且都由同一组潜在的非谐力场决定。对角和非对角非谐性的平均值分别为15.7 cm⁻¹和9.9 cm⁻¹。两个局域模式频率差的平均值估计为9.7 cm⁻¹,显示出非简并的局域模式图像。对于重要的肽构象,发现计算得到的非谐参数与密度泛函理论水平上获得的值以及最近二维红外实验获得的值合理一致。

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