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1
Semi-automatic web service composition for the life sciences using the BioMoby semantic web framework.
J Biomed Inform. 2008 Oct;41(5):837-47. doi: 10.1016/j.jbi.2008.02.005. Epub 2008 Mar 4.
2
Semantic Web Service provision: a realistic framework for Bioinformatics programmers.
Bioinformatics. 2007 May 1;23(9):1178-80. doi: 10.1093/bioinformatics/btm060. Epub 2007 Mar 24.
3
Science gateways for semantic-web-based life science applications.
Stud Health Technol Inform. 2012;175:119-30.
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Improving life sciences information retrieval using semantic web technology.
Brief Bioinform. 2007 May;8(3):172-82. doi: 10.1093/bib/bbm016. Epub 2007 May 25.
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Building biomedical web communities using a semantically aware content management system.
Brief Bioinform. 2009 Mar;10(2):129-38. doi: 10.1093/bib/bbn052. Epub 2008 Dec 6.
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Towards Semantic e-Science for Traditional Chinese Medicine.
BMC Bioinformatics. 2007 May 9;8 Suppl 3(Suppl 3):S6. doi: 10.1186/1471-2105-8-S3-S6.
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Interoperability with Moby 1.0--it's better than sharing your toothbrush!
Brief Bioinform. 2008 May;9(3):220-31. doi: 10.1093/bib/bbn003. Epub 2008 Jan 31.
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Combining Semantic Web technologies with Multi-Agent Systems for integrated access to biological resources.
J Biomed Inform. 2008 Oct;41(5):848-59. doi: 10.1016/j.jbi.2008.05.007. Epub 2008 May 23.

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Perspectives on automated composition of workflows in the life sciences.
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APE in the Wild: Automated Exploration of Proteomics Workflows in the bio.tools Registry.
J Proteome Res. 2021 Apr 2;20(4):2157-2165. doi: 10.1021/acs.jproteome.0c00983. Epub 2021 Mar 15.
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Tool recommender system in Galaxy using deep learning.
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Automated workflow composition in mass spectrometry-based proteomics.
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Towards an Oncology Database (ONCOD) Using a Warehousing Approach.
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Semantic Web integration of Cheminformatics resources with the SADI framework.
J Cheminform. 2011 May 16;3:16. doi: 10.1186/1758-2946-3-16.
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Semantics-based composition of EMBOSS services.
J Biomed Semantics. 2011 Mar 7;2 Suppl 1(Suppl 1):S5. doi: 10.1186/2041-1480-2-S1-S5.
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Ergatis: a web interface and scalable software system for bioinformatics workflows.
Bioinformatics. 2010 Jun 15;26(12):1488-92. doi: 10.1093/bioinformatics/btq167. Epub 2010 Apr 22.
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Magallanes: a web services discovery and automatic workflow composition tool.
BMC Bioinformatics. 2009 Oct 15;10:334. doi: 10.1186/1471-2105-10-334.
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XML-based approaches for the integration of heterogeneous bio-molecular data.
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