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底物结合对人葡萄糖激酶的催化激活作用:D-葡萄糖与超开放形式结合及构象转变过程中涉及的残基接触

Catalytic activation of human glucokinase by substrate binding: residue contacts involved in the binding of D-glucose to the super-open form and conformational transitions.

作者信息

Molnes Janne, Bjørkhaug Lise, Søvik Oddmund, Njølstad Pål R, Flatmark Torgeir

机构信息

Department of Clinical Medicine, University of Bergen, Norway.

出版信息

FEBS J. 2008 May;275(10):2467-81. doi: 10.1111/j.1742-4658.2008.06391.x. Epub 2008 Apr 7.

Abstract

alpha-D-Glucose activates glucokinase (EC 2.7.1.1) on its binding to the active site by inducing a global hysteretic conformational change. Using intrinsic tryptophan fluorescence as a probe on the alpha-D-glucose induced conformational changes in the pancreatic isoform 1 of human glucokinase, key residues involved in the process were identified by site-directed mutagenesis. Single-site W-->F mutations enabled the assignment of the fluorescence enhancement (DeltaF/F(0)) mainly to W99 and W167 in flexible loop structures, but the biphasic time course of DeltaF/F(0) is variably influenced by all tryptophan residues. The human glucokinase-alpha-D-glucose association (K(d) = 4.8 +/- 0.1 mm at 25 degrees C) is driven by a favourable entropy change (DeltaS = 150 +/- 10 J.mol(-1).K(-1)). Although X-ray crystallographic studies have revealed the alpha-d-glucose binding residues in the closed state, the contact residues that make essential contributions to its binding to the super-open conformation remain unidentified. In the present study, we combined functional mutagenesis with structural dynamic analyses to identify residue contacts involved in the initial binding of alpha-d-glucose and conformational transitions. The mutations N204A, D205A or E256A/K in the L-domain resulted in enzyme forms that did not bind alpha-D-glucose at 200 mm and were essentially catalytically inactive. Our data support a molecular dynamic model in which a concerted binding of alpha-D-glucose to N204, N231 and E256 in the super-open conformation induces local torsional stresses at N204/D205 propagating towards a closed conformation, involving structural changes in the highly flexible interdomain connecting region II (R192-N204), helix 5 (V181-R191), helix 6 (D205-Y215) and the C-terminal helix 17 (R447-K460).

摘要

α-D-葡萄糖通过诱导全局性滞后构象变化,在与活性位点结合时激活葡萄糖激酶(EC 2.7.1.1)。利用内在色氨酸荧光作为探针,研究α-D-葡萄糖诱导的人葡萄糖激酶胰腺同工型1的构象变化,通过定点诱变确定了该过程中涉及的关键残基。单一位点的W→F突变使得荧光增强(ΔF/F₀)主要归因于柔性环结构中的W99和W167,但ΔF/F₀的双相时间进程受到所有色氨酸残基的不同影响。人葡萄糖激酶与α-D-葡萄糖的缔合(25℃时Kd = 4.8±0.1 mM)由有利的熵变(ΔS = 150±10 J·mol⁻¹·K⁻¹)驱动。尽管X射线晶体学研究已经揭示了处于闭合状态下的α-D-葡萄糖结合残基,但对其与超开放构象结合起关键作用的接触残基仍未确定。在本研究中,我们将功能诱变与结构动力学分析相结合,以确定参与α-D-葡萄糖初始结合和构象转变的残基接触。L结构域中的N204A、D205A或E256A/K突变产生的酶形式在200 mM时不结合α-D-葡萄糖,且基本上无催化活性。我们的数据支持一个分子动力学模型,即α-D-葡萄糖在超开放构象下与N204、N231和E256协同结合,在N204/D205处诱导局部扭转应力,向闭合构象传播,涉及高柔性的结构域间连接区域II(R192-N204)、螺旋5(V181-R191)、螺旋6(D205-Y215)和C末端螺旋17(R447-K460)的结构变化。

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