Heredia Vladi V, Thomson Jim, Nettleton David, Sun Shaoxian
Biochemical Pharmacology, La Jolla Laboratory, Pfizer Global Research and Development, San Diego, California 92121, USA.
Biochemistry. 2006 Jun 20;45(24):7553-62. doi: 10.1021/bi060253q.
The transient kinetics of glucose binding to glucokinase (GK) was studied using stopped-flow fluorescence spectrophotometry to investigate the underlying mechanism of positive cooperativity of monomeric GK with glucose. Glucose binding to GK was shown to display biphasic kinetics that fit best to a reversible two-step mechanism. GK initially binds glucose to form a transient intermediate, namely, E* x glucose, followed by a conformational change to a catalytically competent E x glucose complex. The microscopic rate constants for each step were determined as follows: on rate k1 of 557 M(-1) s(-1) and off rate k(-1) of 8.1 s(-1) for E* x glucose formation, and forward rate k2 of 0.45 s(-1) and reverse rate k(-2) of 0.28 s(-1) for the conformational change from E* x glucose to E x glucose. These results suggest that the enzyme conformational change induced by glucose binding is a reversible, slow event that occurs outside the catalytic cycle (kcat = 38 s(-1)). This slow transition between the two enzyme conformations modulated by glucose likely forms the kinetic foundation for the allosteric regulation. Furthermore, the kinetics of the enzyme conformational change was altered in favor of E x glucose formation in D2O, accompanied by a decrease in cooperativity with glucose (Hill slope of 1.3 in D2O vs 1.7 in H2O). The deuterium solvent isotope effects confirm the role of the conformational change in the magnitude of glucose cooperativity. Similar studies were conducted with GK activating mutation Y214C at the allosteric activator site that is likely involved in the protein domain rearrangement associated with glucose binding. The mutation enhanced equilibrium glucose binding by a combination of effects on both the formation of E* x glucose and an enzyme conformational change to E x glucose. Kinetic simulation by KINSIM supports the conclusion that the kinetic cooperativity of GK arises from slow glucose-induced conformational changes in GK.
利用停流荧光分光光度法研究了葡萄糖与葡萄糖激酶(GK)结合的瞬态动力学,以探究单体GK与葡萄糖正协同性的潜在机制。结果表明,葡萄糖与GK的结合呈现双相动力学,最符合可逆的两步机制。GK首先结合葡萄糖形成一个瞬态中间体,即E*·葡萄糖,随后发生构象变化形成具有催化活性的E·葡萄糖复合物。确定了每个步骤的微观速率常数如下:E*·葡萄糖形成的结合速率k1为557 M⁻¹ s⁻¹,解离速率k⁻¹为8.1 s⁻¹;从E*·葡萄糖到E·葡萄糖构象变化的正向速率k2为0.45 s⁻¹,反向速率k⁻²为0.28 s⁻¹。这些结果表明,葡萄糖结合诱导的酶构象变化是一个可逆的、缓慢的事件,发生在催化循环之外(kcat = 38 s⁻¹)。由葡萄糖调节的两种酶构象之间的这种缓慢转变可能构成了变构调节的动力学基础。此外,在重水中,酶构象变化的动力学发生改变,有利于E·葡萄糖的形成,同时与葡萄糖的协同性降低(重水中的希尔斜率为1.3,而在水中为1.7)。氘溶剂同位素效应证实了构象变化在葡萄糖协同性大小中的作用。对变构激活位点的GK激活突变Y214C进行了类似的研究,该位点可能参与了与葡萄糖结合相关的蛋白质结构域重排。该突变通过对E*·葡萄糖形成和酶向E·葡萄糖构象变化的综合影响,增强了葡萄糖的平衡结合。KINSIM进行的动力学模拟支持了GK的动力学协同性源于葡萄糖诱导的GK缓慢构象变化这一结论。