Waller Mark P, Geethalakshmi K R, Bühl Michael
Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, D-45470 Mülheim an der Ruhr, Germany.
J Phys Chem B. 2008 May 8;112(18):5813-23. doi: 10.1021/jp800580n. Epub 2008 Apr 16.
According to quantum-mechanical/molecular-mechanical (QM/MM) optimizations, the active-site geometries of vanadium-dependent bromoperoxidase (VBPO) and vanadium-dependent chloroperoxidase (VCPO) are very similar. 51V NMR chemical shifts calculated from QM/MM-optimized models of VBPO are critically compared to VCPO and are found to be very similar for the two related proteins. The primary difference between these related structures, the presence of a His411 in VBPO whereas Phe397 is located at that position in VCPO, is studied via analysis of the respective theoretical 51V NMR spectra. The long-range electrostatic effects from more distal residues are also studied to establish their effect. Similar results are obtained for the two active sites of the VBPO homodimer. The experimentally observed shielding of the isotropic 51V NMR chemical shift on going from VCPO to VBPO is somewhat underestimated in the QM/MM models studied. NMR and NQC tensors of both enzymes are predicted to show noticeable differences, suggesting that precise solid-state 51V NMR data, when they become available, can be a sensitive probe for subtle differences in structural details between these enzymes.
根据量子力学/分子力学(QM/MM)优化结果,钒依赖性溴过氧化物酶(VBPO)和钒依赖性氯过氧化物酶(VCPO)的活性位点几何结构非常相似。从VBPO的QM/MM优化模型计算出的51V NMR化学位移与VCPO进行了严格比较,发现这两种相关蛋白质的化学位移非常相似。通过分析各自的理论51V NMR光谱,研究了这些相关结构之间的主要差异,即VBPO中存在His411,而VCPO中该位置为Phe397。还研究了更远端残基的远程静电效应以确定其影响。VBPO同二聚体的两个活性位点获得了相似的结果。在所研究的QM/MM模型中,从VCPO到VBPO时实验观察到的各向同性51V NMR化学位移的屏蔽效应被略微低估。预计这两种酶的NMR和NQC张量会显示出明显差异,这表明精确的固态51V NMR数据一旦可用,可能成为探测这些酶结构细节细微差异的灵敏探针。