Geethalakshmi K R, Waller Mark P, Thiel Walter, Bühl Michael
Max-Planck-Institut fur Kohlenforschung, Kaiser-Wilhelm-Platz, Mulheim an der Ruhr, Germany.
J Phys Chem B. 2009 Apr 2;113(13):4456-65. doi: 10.1021/jp8109308.
QM/MM models of the peroxo forms of vanadium-containing haloperoxidases (VHPOs) are critically assessed in terms of active site geometries, hydrogen bonds within the active site, isotropic and anisotropic (51)V NMR chemical shifts, and TD-DFT excitation energies. The geometric stability within the active site of the protein is comparable to the respective native forms, as indicated by low standard deviations in bond lengths across a number of local minima sampled along MD trajectories. There is a significant calculated upfield shift in delta((51)V) upon formation of the peroxo from the respective native forms for both the vanadium-containing chloroperoxidase (VCPO) and vanadium-containing bromoperoxidase (VBPO) models, which is in qualitative agreement with (51)V NMR experiments of VBPO in solution. The models show appreciable differences between the anisotropic chemical shifts of the different protonation states of the peroxo form of VHPO. The most likely candidates for the peroxo forms of the VHPO enzymes appear to be unprotonated or have a single proton on either of the equatorial oxygen ligands, based on QM/MM modeling in combination with X-ray, (51)V NMR, and UV-vis data.
从活性位点几何结构、活性位点内的氢键、各向同性和各向异性(51)V核磁共振化学位移以及TD-DFT激发能等方面对含钒卤过氧化物酶(VHPOs)过氧形式的QM/MM模型进行了严格评估。如沿MD轨迹采样的多个局部极小值处键长的低标准偏差所示,蛋白质活性位点内的几何稳定性与各自的天然形式相当。对于含钒氯过氧化物酶(VCPO)和含钒溴过氧化物酶(VBPO)模型,从各自的天然形式形成过氧时,计算出的δ((51)V)有明显的高场位移,这与溶液中VBPO的(51)V NMR实验定性一致。模型显示了VHPO过氧形式不同质子化状态的各向异性化学位移之间存在明显差异。基于QM/MM建模结合X射线、(51)V NMR和紫外可见数据,VHPO酶过氧形式最可能的候选物似乎是未质子化的,或者在赤道氧配体中的任何一个上有一个单质子。