Waller Mark P, Bühl Michael, Geethalakshmi K R, Wang Dongqi, Thiel Walter
Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany.
Chemistry. 2007;13(17):4723-32. doi: 10.1002/chem.200700295.
(51)V NMR chemical shifts calculated from QM/MM-optimized (QM=quantum mechanical; MM=molecular mechanical) models of vanadium-dependent chloroperoxidase (VCPO) are presented. An extensive number of protonation states for the vanadium cofactor (active site of the protein) and a number of probable positional isomers for each of the protonation states are considered. The size of the QM region is increased incrementally to observe the convergence behavior of the (51)V NMR chemical shifts. A total of 40 models are assessed by comparison to experimental solid-state (51)V NMR results recently reported in the literature. Isotropic chemical shifts are found to be a poor indicator of the protonation state; however, anisotropic chemical shifts and the nuclear quadrupole tensors appear to be sensitive to changes in the proton environment of the vanadium nuclei. This detailed investigation of the (51)V NMR chemical shifts computed from QM/MM models provides further evidence that the ground state is either a triply protonated (one axial water and one equatorial hydroxyl group) or a doubly protonated vanadate moiety in VCPO. Particular attention is given to the electrostatic and geometric effects of the protein environment. This is the first study to compute anisotropic NMR chemical shifts from QM/MM models of an active metalloprotein for direct comparison with solid-state MAS NMR data. This theoretical approach enhances the potential use of experimental solid-state NMR spectroscopy for the structural determination of metalloproteins.
本文给出了通过钒依赖性氯过氧化物酶(VCPO)的量子力学/分子力学(QM = 量子力学;MM = 分子力学)优化模型计算得到的⁵¹V核磁共振化学位移。考虑了钒辅因子(蛋白质活性位点)的大量质子化状态以及每种质子化状态的许多可能的位置异构体。逐步增加QM区域的大小,以观察⁵¹V核磁共振化学位移的收敛行为。通过与文献中最近报道的实验固态⁵¹V核磁共振结果进行比较,总共评估了40个模型。发现各向同性化学位移对质子化状态的指示作用较差;然而,各向异性化学位移和核四极张量似乎对钒核质子环境的变化敏感。对从QM/MM模型计算得到的⁵¹V核磁共振化学位移进行的详细研究进一步证明,VCPO的基态要么是三重质子化(一个轴向水和一个赤道羟基),要么是双质子化的钒酸盐部分。特别关注了蛋白质环境的静电和几何效应。这是第一项从活性金属蛋白的QM/MM模型计算各向异性核磁共振化学位移以直接与固态MAS核磁共振数据进行比较的研究。这种理论方法增强了实验固态核磁共振光谱在金属蛋白结构测定中的潜在应用。