Rodin Andrei S, Rodin Sergei N
School of Public Health, University of Texas, Houston, TX 77030, USA.
In Silico Biol. 2007;7(3):309-18.
The updated structural and phylogenetic analyses of tRNA pairs with complementary anticodons provide independent support for our earlier finding, namely that these tRNA pairs concertedly show complementary second bases in the acceptor stem. Two implications immediately follow: first, that a tRNA molecule gained its present, complete, cloverleaf shape via duplication(s) of a shorter precursor. Second, that common ancestry is shared by two major components of the genetic code within the tRNA molecule--the classic code per se embodied in anticodon triplets, and the operational code of aminoacylation embodied primarily in the first three base pairs of the acceptor stems. In this communication we show that it might have been a double, sense-antisense, in-frame translation of the very first protein-encoding genes that directed the code's earliest expansion, thus preserving this fundamental dual-complementary link between acceptors and anticodons. Furthermore, the dual complementarity appears to be consistent with two mirror-symmetrical modes by which class I and II aminoacyl-tRNA synthetases recognize the cognate tRNAs--from the minor and major groove side of the acceptor stem, respectively.
对具有互补反密码子的tRNA对进行的更新结构和系统发育分析,为我们早期的发现提供了独立支持,即这些tRNA对在受体茎中一致显示互补的第二位碱基。由此立即产生两个推论:第一,tRNA分子通过较短前体的重复获得了其目前完整的三叶草形状。第二,tRNA分子内遗传密码的两个主要组成部分具有共同的祖先——反密码子三联体中体现的经典密码本身,以及主要体现在受体茎前三对碱基中的氨酰化操作密码。在本通讯中,我们表明,可能是最早的蛋白质编码基因的双重、有义-反义、框内翻译指导了密码的最早扩展,从而保留了受体和反密码子之间这种基本的双重互补联系。此外,这种双重互补似乎与I类和II类氨酰-tRNA合成酶识别同源tRNA的两种镜像对称模式一致——分别从受体茎的小沟侧和大沟侧识别。