Sevim Volkan, Rikvold Per Arne
School of Computational Science, Florida State University, Tallahassee, FL 32306-4120, USA.
J Theor Biol. 2008 Jul 21;253(2):323-32. doi: 10.1016/j.jtbi.2008.03.003. Epub 2008 Mar 8.
Robustness to mutations and noise has been shown to evolve through stabilizing selection for optimal phenotypes in model gene regulatory networks. The ability to evolve robust mutants is known to depend on the network architecture. How do the dynamical properties and state-space structures of networks with high and low robustness differ? Does selection operate on the global dynamical behavior of the networks? What kind of state-space structures are favored by selection? We provide damage propagation analysis and an extensive statistical analysis of state spaces of these model networks to show that the change in their dynamical properties due to stabilizing selection for optimal phenotypes is minor. Most notably, the networks that are most robust to both mutations and noise are highly chaotic. Certain properties of chaotic networks, such as being able to produce large attractor basins, can be useful for maintaining a stable gene-expression pattern. Our findings indicate that conventional measures of stability, such as damage propagation, do not provide much information about robustness to mutations or noise in model gene regulatory networks.
在模型基因调控网络中,对突变和噪声的鲁棒性已被证明是通过对最优表型的稳定选择而进化的。进化出鲁棒突变体的能力已知取决于网络结构。具有高鲁棒性和低鲁棒性的网络的动力学特性和状态空间结构有何不同?选择是否作用于网络的全局动力学行为?选择青睐哪种状态空间结构?我们提供了损伤传播分析以及对这些模型网络状态空间的广泛统计分析,以表明由于对最优表型的稳定选择而导致的其动力学特性变化很小。最值得注意的是,对突变和噪声都最具鲁棒性的网络是高度混沌的。混沌网络的某些特性,例如能够产生大的吸引子盆地,可能有助于维持稳定的基因表达模式。我们的研究结果表明,传统的稳定性度量,如损伤传播,在模型基因调控网络中并不能提供太多关于对突变或噪声的鲁棒性的信息。