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通过流式细胞术直方图估计S期持续时间的变化。

Estimating the variation in S phase duration from flow cytometric histograms.

作者信息

Larsson Sara, Ryden Tobias, Holst Ulla, Oredsson Stina, Johansson Maria

机构信息

Centre for Mathematical Sciences, Division of Mathematical Statistics, Lund University, P.O. Box 118, 221 00 Lund, Sweden.

出版信息

Math Biosci. 2008 May;213(1):40-9. doi: 10.1016/j.mbs.2008.01.009. Epub 2008 Feb 14.

Abstract

A stochastic model for interpreting BrdUrd DNA FCM-derived data is proposed. The model is based on branching processes and describes the progression of the DNA distribution of BrdUrd-labelled cells through the cell cycle. With the main focus on estimating the S phase duration and its variation, the DNA replication rate is modelled by a piecewise linear function, while assuming a gamma distribution for the S phase duration. Estimation of model parameters was carried out using maximum likelihood for data from two different cell lines. The results provided quite a good fit to the data, suggesting that stochastic models may be a valuable tool for analysing this kind of data.

摘要

提出了一种用于解释BrdUrd DNA流式细胞术衍生数据的随机模型。该模型基于分支过程,描述了BrdUrd标记细胞的DNA分布在细胞周期中的进展。主要关注于估计S期持续时间及其变化,DNA复制速率由分段线性函数建模,同时假设S期持续时间服从伽马分布。使用最大似然法对来自两种不同细胞系的数据进行模型参数估计。结果与数据拟合得相当好,表明随机模型可能是分析这类数据的有价值工具。

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