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通过期望最大化(EM)算法对来自DNA流式细胞术(FCM)的细胞动力学数据进行统计评估。

Statistical evaluation of cell kinetic data from DNA flow cytometry (FCM) by the EM algorithm.

作者信息

Baldetorp B, Dalberg M, Holst U, Lindgren G

机构信息

Department of Oncology, University Hospital, Lund, Sweden.

出版信息

Cytometry. 1989 Nov;10(6):695-705. doi: 10.1002/cyto.990100605.

Abstract

Flow cytometric DNA measurements yield the amount of DNA for each of a large number of cells. A DNA histogram normally consists of a mixture of one or more constellations of G0/G1-, S-, G2/M-phase cells, together with internal standards, debris, background noise, and one or more populations of clumped cells. We have modelled typical DNA histograms as a mixed distribution with Gaussian densities for the G0/G1 and G2/M phases, an S-phase density, assumed to be uniform between the G0/G1 and G2/M peaks, observed with a Gaussian error, and with Gaussian densities for standards of chicken and trout red blood cells. The debris is modelled as a truncated exponential distribution, and we also have included a uniform background noise distribution over the whole observation interval. We have explored a new approach for maximum-likelihood analyses of complex DNA histograms by the application of the EM algorithm. This algorithm was used for four observed DNA histograms of varying complexity. Our results show that the algorithm works very well, and it converges to reasonable values for all parameters. In simulations from the estimated models, we have investigated bias, variance, and correlations of the estimates.

摘要

流式细胞术DNA测量可得出大量细胞中每个细胞的DNA含量。DNA直方图通常由一个或多个G0/G1期、S期、G2/M期细胞群的混合组成,还包括内标、碎片、背景噪声以及一个或多个聚集细胞群。我们将典型的DNA直方图建模为一种混合分布,其中G0/G1期和G2/M期具有高斯密度,S期密度假定在G0/G1期和G2/M期峰值之间均匀分布,并带有高斯误差,同时鸡和鲑鱼红细胞标准品具有高斯密度。碎片被建模为截断指数分布,并且我们还在整个观察区间内纳入了均匀的背景噪声分布。我们通过应用EM算法探索了一种对复杂DNA直方图进行最大似然分析的新方法。该算法被用于四个复杂度不同的观察到的DNA直方图。我们的结果表明该算法运行良好,并且所有参数都收敛到合理值。在从估计模型进行的模拟中,我们研究了估计值的偏差、方差和相关性。

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