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引用本文的文献

1
PRODORIC: state-of-the-art database of prokaryotic gene regulation.
Nucleic Acids Res. 2022 Jan 7;50(D1):D295-D302. doi: 10.1093/nar/gkab1110.
2
Regulatory and metabolic networks for the adaptation of Pseudomonas aeruginosa biofilms to urinary tract-like conditions.
PLoS One. 2013 Aug 13;8(8):e71845. doi: 10.1371/journal.pone.0071845. eCollection 2013.
3
MGcV: the microbial genomic context viewer for comparative genome analysis.
BMC Genomics. 2013 Apr 1;14:209. doi: 10.1186/1471-2164-14-209.
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Regulatory network operations in the Pathway Tools software.
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5
PePPER: a webserver for prediction of prokaryote promoter elements and regulons.
BMC Genomics. 2012 Jul 2;13:299. doi: 10.1186/1471-2164-13-299.
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The Regulatory Network of Pseudomonas aeruginosa.
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A short story about a big magic bug.
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Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology.
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Towards the integrated analysis, visualization and reconstruction of microbial gene regulatory networks.
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PRODORIC (release 2009): a database and tool platform for the analysis of gene regulation in prokaryotes.
Nucleic Acids Res. 2009 Jan;37(Database issue):D61-5. doi: 10.1093/nar/gkn837. Epub 2008 Oct 30.

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KEGG for linking genomes to life and the environment.
Nucleic Acids Res. 2008 Jan;36(Database issue):D480-4. doi: 10.1093/nar/gkm882. Epub 2007 Dec 12.
3
Database resources of the National Center for Biotechnology Information.
Nucleic Acids Res. 2008 Jan;36(Database issue):D13-21. doi: 10.1093/nar/gkm1000. Epub 2007 Nov 27.
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The universal protein resource (UniProt).
Nucleic Acids Res. 2008 Jan;36(Database issue):D190-5. doi: 10.1093/nar/gkm895. Epub 2007 Nov 27.
5
CoryneRegNet 4.0 - A reference database for corynebacterial gene regulatory networks.
BMC Bioinformatics. 2007 Nov 6;8:429. doi: 10.1186/1471-2105-8-429.
6
The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.
Nucleic Acids Res. 2008 Jan;36(Database issue):D623-31. doi: 10.1093/nar/gkm900. Epub 2007 Oct 27.
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DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information.
Nucleic Acids Res. 2008 Jan;36(Database issue):D93-6. doi: 10.1093/nar/gkm910. Epub 2007 Oct 25.
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Integration of biological networks and gene expression data using Cytoscape.
Nat Protoc. 2007;2(10):2366-82. doi: 10.1038/nprot.2007.324.
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Tools for visually exploring biological networks.
Bioinformatics. 2007 Oct 15;23(20):2651-9. doi: 10.1093/bioinformatics/btm401. Epub 2007 Aug 25.
10
RegTransBase--a database of regulatory sequences and interactions in a wide range of prokaryotic genomes.
Nucleic Acids Res. 2007 Jan;35(Database issue):D407-12. doi: 10.1093/nar/gkl865. Epub 2006 Nov 16.

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