Kar Karunakar, Wang Yuh-Hwa, Brodsky Barbara
Department of Biochemistry, Robert Wood Johnson Medical School, University of Medicine and Dentistry of New Jersey, Piscataway, New Jersey 08854, USA.
Protein Sci. 2008 Jun;17(6):1086-95. doi: 10.1110/ps.083441308. Epub 2008 Apr 25.
The process of self-assembly of the triple-helical peptide (Pro-Hyp-Gly)(10) into higher order structure resembles the nucleation-growth mechanism of collagen fibril formation in many features, but the irregular morphology of the self-assembled peptide contrasts with the ordered fibers and networks formed by collagen in vivo. The amino acid sequence in the central region of the (Pro-Hyp-Gly)(10) peptide was varied and found to affect the kinetics of self-assembly and nature of the higher order structure formed. Single amino acid changes in the central triplet produced irregular higher order structures similar to (Pro-Hyp-Gly)(10), but the rate of self-association was markedly delayed by a single change in one Pro to Ala or Leu. The introduction of a Hyp-rich hydrophobic sequence from type IV collagen resulted in a more regular suprastructure of extended fibers that sometimes showed supercoiling and branching features similar to those seen for type IV collagen in the basement membrane network. Several peptides, where central Pro-Hyp sequences were replaced by charged residues or a nine-residue hydrophobic region from type III collagen, lost the ability to self-associate under standard conditions. The inability to self-assemble likely results from loss of imino acids, and lack of an appropriate distribution of hydrophobic/electrostatic residues. The effect of replacement of a single Gly residue was also examined, as a model for collagen diseases such as osteogenesis imperfecta and Alport syndrome. Unexpectedly, the Gly to Ala replacement interfered with self-assembly of (Pro-Hyp-Gly)(10), while the peptide with a Gly to Ser substitution self-associated to form a fibrillar structure.
三螺旋肽(Pro-Hyp-Gly)(10) 自组装成高阶结构的过程在许多方面类似于胶原纤维形成的成核-生长机制,但自组装肽的不规则形态与体内胶原蛋白形成的有序纤维和网络形成对比。改变(Pro-Hyp-Gly)(10) 肽中心区域的氨基酸序列,发现其会影响自组装动力学以及所形成高阶结构的性质。中心三联体中的单个氨基酸变化产生了类似于(Pro-Hyp-Gly)(10) 的不规则高阶结构,但将一个Pro 替换为Ala 或Leu 会显著延迟自缔合速率。引入来自IV 型胶原的富含Hyp 的疏水序列导致形成更规则的延伸纤维超结构,其有时表现出类似于基底膜网络中IV 型胶原的超螺旋和分支特征。几种肽,其中中心Pro-Hyp 序列被带电残基或来自III 型胶原的九残基疏水区域取代,在标准条件下失去了自缔合能力。无法自组装可能是由于亚氨基酸的丧失以及缺乏疏水/静电残基的适当分布。还研究了单个Gly 残基替换的影响,作为诸如成骨不全和阿尔波特综合征等胶原疾病的模型。出乎意料的是,Gly 被Ala 取代会干扰(Pro-Hyp-Gly)(10) 的自组装,而具有Gly 被Ser 取代的肽会自缔合形成纤维状结构。