Sista P, Wasikowski B, Lecocq P, Pattery T, Bacheler L
VircoLab Inc., Durham, NC 27713, USA.
J Clin Virol. 2008 Aug;42(4):405-8. doi: 10.1016/j.jcv.2008.03.023. Epub 2008 May 12.
The HIV-1 protease mutation I50 L causes atazanavir resistance but increases susceptibility to other PIs. Predicted phenotypic FC values were obtained from viral genotypes, using the virtual Phenotype-LM bioinformatics tool (powering vircoTYPE).
To evaluate I50 L's effect on susceptibility to 8 PIs, in a large genotype database.
I50 L containing routine clinical isolate samples in Virco's genotype database were paired with samples having like patterns (or profiles) of IAS-USA-defined primary PI mutations, but lacking I50 L. Using vircoTYPE (version 4.1), the median predicted FC for each mutational profile was determined. I50 L-associated shifts in FC were evaluated using drug-specific CCOs.
We selected 307 and 37098 samples with and without I50 L. These corresponded to 31 mutation patterns of > or =3 samples each. I50 L caused resistance to atazanavir in all 31 mutation contexts, but was associated with higher susceptibility for other PIs. The largest I50 L-associated shifts in median predicted FC were: 1.2 to 42.4 (atazanavir), 10.2 to 3.2 (amprenavir), 3.3 to 0.5 (darunavir), 13 to 0.5 (indinavir), 34.9 to 1.3 (lopinavir), 22.3 to 1.3 (nelfinavir), 5.2 to 0.3 (saquinavir) and 29.9 to 5.2 (tipranavir).
The PI mutation I50 L causes clinically relevant resistance and increased susceptibility to atazanavir and other PIs respectively.
HIV-1蛋白酶突变I50L会导致对阿扎那韦耐药,但会增加对其他蛋白酶抑制剂(PI)的敏感性。使用虚拟表型-LM生物信息学工具(为vircoTYPE提供支持)从病毒基因型中获取预测的表型折点(FC)值。
在一个大型基因型数据库中评估I50L对8种PI敏感性的影响。
将Virco基因型数据库中含有I50L的常规临床分离株样本与具有IAS-USA定义的原发性PI突变相似模式(或谱)但缺乏I50L的样本进行配对。使用vircoTYPE(4.1版)确定每个突变谱的中位预测FC。使用药物特异性折点变化(CCO)评估I50L相关的FC变化。
我们选择了307个有I50L的样本和37098个没有I50L的样本。这些样本分别对应31种每种有≥3个样本的突变模式。在所有31种突变情况下,I50L都会导致对阿扎那韦耐药,但与对其他PI的更高敏感性相关。I50L相关的中位预测FC最大变化为:1.2至42.4(阿扎那韦)、10.2至3.2(安普那韦)、3.3至0.5(达芦那韦)、13至0.5(茚地那韦)、34.9至1.3(洛匹那韦)、22.3至1.3(奈非那韦)、5.2至0.3(沙奎那韦)和29.9至5.2(替拉那韦)。
PI突变I50L分别导致临床相关耐药以及对阿扎那韦和其他PI的敏感性增加。