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基于相关性平衡的急性毒性定量构效关系建模

QSAR modeling of acute toxicity by balance of correlations.

作者信息

Toropov Andrey A, Rasulev Bakhtiyor F, Leszczynski Jerzy

机构信息

Computational Center for Molecular Structure and Interactions, Department of Chemistry, Jackson State University, 1400 J. R. Lynch Street, P.O. Box 17910, Jackson, MS 39217, USA.

出版信息

Bioorg Med Chem. 2008 Jun 1;16(11):5999-6008. doi: 10.1016/j.bmc.2008.04.055. Epub 2008 Apr 26.

Abstract

Optimal descriptors based on the simplified molecular input line entry system (SMILES) have been utilized in modeling of acute toxicity towards rats. Toxicity of 61 benzene derivatives has been modeled by means of balance of correlations for sets of the training (n=27) and calibration (n=24). The obtained models were evaluated with the external test set (n=10). Comparison of models based on the balance of correlations and models which were obtained on base of the total training (i.e., in case of utilization both training and calibration sets as the united training set) has shown that the balance of correlations gives improvement of statistical quality for the external test set. Predictions based on the one-variable model (based on the correlation balance) are better that the results obtained by the multiple linear regression analysis based on topological and quantum chemical descriptors. A QSAR analysis showed that the electronegativity of the molecule plays an important role in acute toxicity of benzene derivatives studied; presence of electronegative groups increasing toxicity. The presence of nitrogen-containing groups (mostly NH groups) increasing the toxicity that confirmed by both approaches.

摘要

基于简化分子输入线输入系统(SMILES)的最佳描述符已用于对大鼠急性毒性进行建模。通过对训练集(n = 27)和校准集(n = 24)的相关性平衡,对61种苯衍生物的毒性进行了建模。使用外部测试集(n = 10)对获得的模型进行评估。基于相关性平衡的模型与基于整个训练集(即在将训练集和校准集用作联合训练集的情况下)获得的模型的比较表明,相关性平衡提高了外部测试集的统计质量。基于单变量模型(基于相关性平衡)的预测优于基于拓扑和量子化学描述符的多元线性回归分析所获得的结果。定量构效关系(QSAR)分析表明,分子的电负性在所研究的苯衍生物的急性毒性中起重要作用;电负性基团的存在会增加毒性。含氮基团(主要是NH基团)的存在增加了毒性,这两种方法均证实了这一点。

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