• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

相似文献

1
Restoration of weak phase-contrast images recorded with a high degree of defocus: the "twin image" problem associated with CTF correction.高度离焦记录的弱相差图像的恢复:与对比度传递函数(CTF)校正相关的“双像”问题。
Ultramicroscopy. 2008 Aug;108(9):921-8. doi: 10.1016/j.ultramic.2008.03.004. Epub 2008 Apr 3.
2
Fast, spatially varying CTF correction in TEM.快速、空间变化的 TEM 中的 CTF 校正。
Ultramicroscopy. 2012 Jul;118:26-34. doi: 10.1016/j.ultramic.2012.05.002. Epub 2012 May 14.
3
Accurate modeling of single-particle cryo-EM images quantitates the benefits expected from using Zernike phase contrast.准确建模单颗粒 cryo-EM 图像定量评估了使用泽尼克相位对比所带来的预期收益。
J Struct Biol. 2011 Jun;174(3):468-75. doi: 10.1016/j.jsb.2011.03.020. Epub 2011 Apr 2.
4
Three-dimensional reconstruction with contrast transfer function correction from energy-filtered cryoelectron micrographs: procedure and application to the 70S Escherichia coli ribosome.基于能量过滤冷冻电子显微照片的对比度传递函数校正的三维重建:方法及其在70S大肠杆菌核糖体上的应用
J Struct Biol. 1997 Apr;118(3):197-219. doi: 10.1006/jsbi.1997.3845.
5
Denoising and covariance estimation of single particle cryo-EM images.单颗粒冷冻电镜图像的去噪与协方差估计
J Struct Biol. 2016 Jul;195(1):72-81. doi: 10.1016/j.jsb.2016.04.013. Epub 2016 Apr 27.
6
Improved Zernike-type phase contrast for transmission electron microscopy.用于透射电子显微镜的改进型泽尼克相衬法。
J Microsc. 2015 Jul;259(1):74-8. doi: 10.1111/jmi.12250. Epub 2015 Apr 9.
7
CryoEM single particle reconstruction with a complex-valued particle stack.基于复数粒子栈的 cryoEM 单颗粒重构。
J Struct Biol. 2023 Jun;215(2):107945. doi: 10.1016/j.jsb.2023.107945. Epub 2023 Mar 6.
8
Efficient 3D-CTF correction for cryo-electron tomography using NovaCTF improves subtomogram averaging resolution to 3.4Å.利用 NovaCTF 进行高效的 3D-CTF 校正,可将冷冻电子断层扫描的亚断层平均分辨率提高至 3.4Å。
J Struct Biol. 2017 Sep;199(3):187-195. doi: 10.1016/j.jsb.2017.07.007. Epub 2017 Jul 22.
9
Contrast transfer function correction applied to cryo-electron tomography and sub-tomogram averaging.应用于冷冻电子断层扫描和亚断层平均的对比度传递函数校正。
J Struct Biol. 2009 Nov;168(2):305-12. doi: 10.1016/j.jsb.2009.08.002. Epub 2009 Aug 8.
10
CTF determination and correction for low dose tomographic tilt series.低剂量断层倾斜系列的 CTF 测定和校正。
J Struct Biol. 2009 Dec;168(3):378-87. doi: 10.1016/j.jsb.2009.08.016. Epub 2009 Sep 2.

引用本文的文献

1
An approach for coherent periodogram averaging of tilt-series data for improved contrast transfer function estimation.一种用于倾斜序列数据的相干周期图平均以改进对比度传递函数估计的方法。
FEBS Open Bio. 2025 May 8. doi: 10.1002/2211-5463.70050.
2
An approach for coherent periodogram averaging of tilt-series data for improved CTF estimation.一种用于倾斜系列数据的相干周期图平均以改进对比度传递函数(CTF)估计的方法。
bioRxiv. 2024 Oct 11:2024.10.10.617684. doi: 10.1101/2024.10.10.617684.
3
Reversible phase transformations between Pb nanocrystals and a viscous liquid-like phase.铅纳米晶体与粘性类液相之间的可逆相变。
Sci Adv. 2024 Jun 21;10(25):eadn6426. doi: 10.1126/sciadv.adn6426. Epub 2024 Jun 19.
4
Computational models of amorphous ice for accurate simulation of cryo-EM images of biological samples.用于准确模拟生物样品冷冻电镜图像的非晶冰的计算模型。
Ultramicroscopy. 2024 Feb;256:113882. doi: 10.1016/j.ultramic.2023.113882. Epub 2023 Nov 4.
5
CryoEM single particle reconstruction with a complex-valued particle stack.基于复数粒子栈的 cryoEM 单颗粒重构。
J Struct Biol. 2023 Jun;215(2):107945. doi: 10.1016/j.jsb.2023.107945. Epub 2023 Mar 6.
6
The Ewald sphere/focus gradient does not limit the resolution of cryoEM reconstructions.埃瓦尔德球/聚焦梯度并不限制冷冻电镜重建的分辨率。
J Struct Biol X. 2022 Dec 30;7:100083. doi: 10.1016/j.yjsbx.2022.100083. eCollection 2023.
7
Parakeet: a digital twin software pipeline to assess the impact of experimental parameters on tomographic reconstructions for cryo-electron tomography.虎皮鹦鹉:一种用于评估实验参数对冷冻电子断层扫描层析重建影响的数字孪生软件管道。
Open Biol. 2021 Oct;11(10):210160. doi: 10.1098/rsob.210160. Epub 2021 Oct 27.
8
Protocols for Processing and Interpreting cryoEM Data Using Bsoft: A Case Study of the Retinal Adhesion Protein, Retinoschisin.使用Bsoft处理和解释冷冻电镜数据的方案:视网膜黏附蛋白视网膜分裂蛋白的案例研究
Bio Protoc. 2020 Jan 20;10(2):e3491. doi: 10.21769/BioProtoc.3491.
9
CDAE: A Cascade of Denoising Autoencoders for Noise Reduction in the Clustering of Single-Particle Cryo-EM Images.CDAE:用于单颗粒冷冻电镜图像聚类中降噪的级联去噪自动编码器
Front Genet. 2021 Jan 20;11:627746. doi: 10.3389/fgene.2020.627746. eCollection 2020.
10
Defocus-dependent Thon-ring fading.离焦相关的托恩环衰落。
Ultramicroscopy. 2021 Mar;222:113213. doi: 10.1016/j.ultramic.2021.113213. Epub 2021 Jan 21.

本文引用的文献

1
Practical factors affecting the performance of a thin-film phase plate for transmission electron microscopy.影响用于透射电子显微镜的薄膜相位板性能的实际因素。
Ultramicroscopy. 2009 Mar;109(4):312-25. doi: 10.1016/j.ultramic.2008.12.006. Epub 2008 Dec 11.
2
A new microscopic principle.一种新的微观原理。
Nature. 1948 May 15;161(4098):777. doi: 10.1038/161777a0.
3
Design of a microfabricated, two-electrode phase-contrast element suitable for electron microscopy.适用于电子显微镜的微纳制造双电极相衬元件的设计。
Ultramicroscopy. 2007 Apr-May;107(4-5):329-39. doi: 10.1016/j.ultramic.2006.09.001. Epub 2006 Oct 12.
4
SPIRE: the SPIDER reconstruction engine.SPIRE:蜘蛛重建引擎。
J Struct Biol. 2007 Jan;157(1):56-63. doi: 10.1016/j.jsb.2006.07.019. Epub 2006 Aug 25.
5
Bsoft: image processing and molecular modeling for electron microscopy.Bsoft:用于电子显微镜的图像处理与分子建模
J Struct Biol. 2007 Jan;157(1):3-18. doi: 10.1016/j.jsb.2006.06.006. Epub 2006 Jun 28.
6
Optimizing phase contrast in transmission electron microscopy with an electrostatic (Boersch) phase plate.利用静电(博尔施)相位板优化透射电子显微镜中的相衬度。
Ultramicroscopy. 2007 Feb-Mar;107(2-3):213-26. doi: 10.1016/j.ultramic.2006.07.006. Epub 2006 Aug 14.
7
Structural basis for the control of translation initiation during stress.应激期间翻译起始调控的结构基础。
Nat Struct Mol Biol. 2004 Nov;11(11):1054-9. doi: 10.1038/nsmb850. Epub 2004 Oct 24.
8
How I discovered phase contrast.
Science. 1955 Mar 11;121(3141):345-9. doi: 10.1126/science.121.3141.345.
9
Transmission electron microscopy with Zernike phase plate.带泽尼克相板的透射电子显微镜。
Ultramicroscopy. 2001 Sep;88(4):243-52. doi: 10.1016/s0304-3991(01)00088-2.
10
Structure determination of tubular crystals of membrane proteins. III. Solvent flattening.膜蛋白管状晶体的结构测定。III. 溶剂扁平化。
Ultramicroscopy. 2000 Jul;84(1-2):29-45. doi: 10.1016/s0304-3991(00)00008-5.

高度离焦记录的弱相差图像的恢复:与对比度传递函数(CTF)校正相关的“双像”问题。

Restoration of weak phase-contrast images recorded with a high degree of defocus: the "twin image" problem associated with CTF correction.

作者信息

Downing Kenneth H, Glaeser Robert M

机构信息

Life Sciences Division, Lawrence Berkeley National Laboratory, University of California, Berkeley, CA 94720, USA.

出版信息

Ultramicroscopy. 2008 Aug;108(9):921-8. doi: 10.1016/j.ultramic.2008.03.004. Epub 2008 Apr 3.

DOI:10.1016/j.ultramic.2008.03.004
PMID:18508199
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2694513/
Abstract

Relatively large values of objective-lens defocus must normally be used to produce detectable levels of image contrast for unstained biological specimens, which are generally weak phase objects. As a result, a subsequent restoration operation must be used to correct for oscillations in the contrast transfer function (CTF) at higher resolution. Currently used methods of CTF correction assume the ideal case in which Friedel mates in the scattered wave have contributed pairs of Fourier components that overlap with one another in the image plane. This "ideal" situation may be only poorly satisfied, or not satisfied at all, as the particle size gets smaller, the defocus value gets larger, and the resolution gets higher. We have therefore investigated whether currently used methods of CTF correction are also effective in restoring the single-sideband image information that becomes displaced (delocalized) by half (or more) the diameter of a particle of finite size. Computer simulations are used to show that restoration either by "phase flipping" or by multiplying by the CTF recovers only about half of the delocalized information. The other half of the delocalized information goes into a doubly defocused "twin" image of the type produced during optical reconstruction of an in-line hologram. Restoration with a Wiener filter is effective in recovering the delocalized information only when the signal-to-noise ratio (S/N) is orders of magnitude higher than that which exists in low-dose images of biological specimens, in which case the Wiener filter approaches division by the CTF (i.e. the formal inverse). For realistic values of the S/N, however, the "twin image" problem seen with a Wiener filter is very similar to that seen when either phase flipping or multiplying by the CTF is used for restoration. The results of these simulations suggest that CTF correction is a poor alternative to using a Zernike-type phase plate when imaging biological specimens, in which case the images can be recorded in a close-to-focus condition, and delocalization of high-resolution information is thus minimized.

摘要

对于未染色的生物标本(通常是弱相位物体),通常必须使用相对较大的物镜散焦值来产生可检测水平的图像对比度。因此,必须使用后续的恢复操作来校正高分辨率下对比度传递函数(CTF)中的振荡。当前使用的CTF校正方法假设了一种理想情况,即散射波中的弗里德尔对在图像平面中贡献了相互重叠的傅里叶分量对。随着颗粒尺寸变小、散焦值变大和分辨率变高,这种“理想”情况可能只能得到很差的满足,或者根本无法满足。因此,我们研究了当前使用的CTF校正方法在恢复因有限尺寸颗粒直径的一半(或更多)而发生位移(离域)的单边带图像信息方面是否也有效。计算机模拟表明,通过“相位翻转”或乘以CTF进行恢复只能恢复大约一半的离域信息。另一半离域信息进入在线全息图光学重建过程中产生的那种双散焦“孪生”图像。只有当信噪比(S/N)比生物标本低剂量图像中的信噪比高几个数量级时,使用维纳滤波器进行恢复才能有效地恢复离域信息,在这种情况下,维纳滤波器接近除以CTF(即形式上的逆)。然而,对于实际的S/N值,使用维纳滤波器时出现的“孪生图像”问题与使用相位翻转或乘以CTF进行恢复时看到的问题非常相似。这些模拟结果表明,在对生物标本成像时,CTF校正相对于使用泽尼克型相位板是一种较差的选择,在使用相位板的情况下,可以在接近聚焦的条件下记录图像,从而将高分辨率信息的离域最小化。