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最后的共同祖先(LUCA)的基因组学

The genomics of LUCA.

作者信息

Mat Wai-Kin, Xue Hong, Wong Jeffrey Tze-Fei

机构信息

Department of Biochemistry and Applied Genomics Center, Hong Kong University of Science & Technology, Clear Water Bay, Hong Kong, China.

出版信息

Front Biosci. 2008 May 1;13:5605-13. doi: 10.2741/3103.

Abstract

To understand the nature and evolution of LUCA, or Last Universal Common Ancestor, the minimum genome of LUCA has been identified based on the genes common to the eight primitive Euryarchaea and Crenarchaea species Methanopyrus kandleri, Methanothermobacter thermautotrophicum, Methanococcus jannaschii, Pyrococcus abyssi, Pyrococcus furiosus, Pyrococcus horikoshii, Aeropyrum pernix and Pyrobaculum aerophilum, together with the methanogenesis genes of the primitive methanogens. The 424 protein encoding genes in the minimum LUCA genome exceed significantly the 150-340 genes estimated to be present in a minimal proteome compatible with life. Thus LUCA was not a minimal organism but the first modern organism equipped with a DNA genome and the universal genetic code. The hyperthermophilic, Methanopyrus-proximal LUCA is consistent with a Hot Cross Origin of life which proposes that early heterotrophic life forms in the cooler temperature zones invented methanogenesis and a DNA genome upon their adaptation to the hydrothermal vents, where life flourished massively on lithoautotrophy supported by carbon dioxide and hydrogen, thereby leading to the rise of LUCA.

摘要

为了了解最后的共同祖先(LUCA)的本质和进化过程,基于甲烷嗜热菌、嗜热自养甲烷杆菌、詹氏甲烷球菌、深渊热球菌、激烈热球菌、堀越热球菌、嗜酸嗜热栖热菌和嗜热栖热放线菌这8种原始广古菌和泉古菌物种的共有基因,以及原始产甲烷菌的产甲烷基因,确定了LUCA的最小基因组。LUCA最小基因组中的424个蛋白质编码基因显著超过了与生命相容的最小蛋白质组中估计存在的150 - 340个基因。因此,LUCA不是一个最小的生物体,而是第一个配备DNA基因组和通用遗传密码的现代生物体。嗜热的、与甲烷嗜热菌相近的LUCA与生命的热泉起源一致,该起源认为,较凉爽温度区域的早期异养生命形式在适应热液喷口时发明了产甲烷作用和DNA基因组,在那里,生命在由二氧化碳和氢气支持的化能自养作用下大量繁衍,从而导致了LUCA的出现。

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