Bastian Peter, Chavarría-Krauser Andrés, Engwer Christian, Jäger Willi, Marnach Sven, Ptashnyk Mariya
Institut für Parallele und Verteilte Systeme, Universität Stuttgart, Universitätsstrasse 38, D-70569 Stuttgart, Germany.
J Theor Biol. 2008 Sep 7;254(1):99-109. doi: 10.1016/j.jtbi.2008.04.014. Epub 2008 Apr 25.
Hairy roots are plants genetically transformed by Agrobacterium rhizogenes, which do not produce shoots and are composed mainly by roots. Hairy roots of Ophiorrhiza mungos Linn. are currently gaining interest of pharmacologists, since a secondary product of their metabolism, camptothecin, is used in chemotherapy. To optimize the production of valuable secondary metabolites it is necessary to understand the metabolism and growth of these roots systems. In this work, a mathematical model for description of apical growth of a dense root network (e.g. hairy roots) is derived. A continuous approach is used to define densities of root tips and root volume. Equations are posed to describe the evolution of these and are coupled to the distribution of nutrient concentration in the medium and inside the network. Following the principles of irreversible thermodynamics, growth velocity is defined as the sum over three different driving forces: nutrient concentration gradients, space gradients and root tip diffusion. A finite volume scheme was used for the simulation and parameters were chosen to fit experimental data from O. mungos Linn. hairy roots. Internal nutrient concentration determines short-term growth. Long-term behavior is limited by the total nutrient amount in the medium. Therefore, mass yield could be increased by guaranteeing a constant supply of nutrients. Increasing the initial mass of inoculation did not result in higher mass yields, since nutrient consumption due to metabolism also rose. Four different growth strategies are compared and their properties discussed. This allowed to understand which strategy might be the best to increase mass production optimally. The model is able to describe very well the temporal evolution of mass increase and nutrient uptake. Our results provide further understanding of growth and density distribution of hairy root network and therefore it is a sound base for future applications to describe, e.g., secondary metabolite production.
毛状根是由发根农杆菌进行遗传转化的植物,其不产生地上茎,主要由根组成。蛇根草的毛状根目前引起了药理学家的兴趣,因为其代谢的一种次生产物喜树碱被用于化疗。为了优化有价值的次生代谢产物的生产,有必要了解这些根系的代谢和生长情况。在这项工作中,推导了一个用于描述密集根网络(如毛状根)顶端生长的数学模型。采用连续方法来定义根尖密度和根体积。建立了描述这些量演变的方程,并将其与培养基和网络内部营养物质浓度的分布相耦合。遵循不可逆热力学原理,生长速度被定义为三种不同驱动力之和:营养物质浓度梯度、空间梯度和根尖扩散。使用有限体积格式进行模拟,并选择参数以拟合蛇根草毛状根的实验数据。内部营养物质浓度决定短期生长。长期行为受到培养基中营养物质总量的限制。因此,通过保证营养物质的持续供应可以提高质量产量。增加接种初始质量并不会导致更高的质量产量,因为代谢引起的营养物质消耗也会增加。比较了四种不同的生长策略并讨论了它们的特性。这有助于理解哪种策略可能是实现最优大规模生产的最佳策略。该模型能够很好地描述质量增加和营养物质吸收的时间演变。我们的结果进一步加深了对毛状根网络生长和密度分布的理解,因此它是未来应用(如描述次生代谢产物生产)的坚实基础。