Thomas S Randall, Baconnier Pierre, Fontecave Julie, Françoise Jean-Pierre, Guillaud François, Hannaert Patrick, Hernández Alfredo, Le Rolle Virginie, Mazière Pierre, Tahi Fariza, White Ronald J
Informatics, Integrative Biology, and Complex Systems, FRE CNRS 3190, Evry 91000, France.
Philos Trans A Math Phys Eng Sci. 2008 Sep 13;366(1878):3175-97. doi: 10.1098/rsta.2008.0079.
We present the current state of the development of the SAPHIR project (a Systems Approach for PHysiological Integration of Renal, cardiac and respiratory function). The aim is to provide an open-source multi-resolution modelling environment that will permit, at a practical level, a plug-and-play construction of integrated systems models using lumped-parameter components at the organ/tissue level while also allowing focus on cellular- or molecular-level detailed sub-models embedded in the larger core model. Thus, an in silico exploration of gene-to-organ-to-organism scenarios will be possible, while keeping computation time manageable. As a first prototype implementation in this environment, we describe a core model of human physiology targeting the short- and long-term regulation of blood pressure, body fluids and homeostasis of the major solutes. In tandem with the development of the core models, the project involves database implementation and ontology development.
我们展示了SAPHIR项目(一种用于肾脏、心脏和呼吸功能生理整合的系统方法)的当前发展状况。其目标是提供一个开源的多分辨率建模环境,在实际层面上,允许使用器官/组织水平的集总参数组件即插即用地构建集成系统模型,同时也能够关注嵌入在更大核心模型中的细胞或分子水平的详细子模型。因此,在保持计算时间可控的同时,将有可能对基因到器官再到生物体的情况进行计算机模拟探索。作为在该环境中的首个原型实现,我们描述了一个针对血压、体液和主要溶质稳态的短期和长期调节的人体生理学核心模型。与核心模型的开发同步,该项目还涉及数据库实施和本体开发。