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小型模型复合物、DNA碱基对和氨基酸对的精确(MP2和CCSD(T)完整基组极限)相互作用能基准数据库。

Benchmark database of accurate (MP2 and CCSD(T) complete basis set limit) interaction energies of small model complexes, DNA base pairs, and amino acid pairs.

作者信息

Jurecka Petr, Sponer Jirí, Cerný Jirí, Hobza Pavel

机构信息

Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic and Center for Biomolecules and Complex Molecular Systems, Flemingovo námestí 2, 166 10, Prague 6, Czech Republic.

出版信息

Phys Chem Chem Phys. 2006 May 7;8(17):1985-93. doi: 10.1039/b600027d. Epub 2006 Mar 7.

DOI:10.1039/b600027d
PMID:16633685
Abstract

MP2 and CCSD(T) complete basis set (CBS) limit interaction energies and geometries for more than 100 DNA base pairs, amino acid pairs and model complexes are for the first time presented together. Extrapolation to the CBS limit is done by using two-point extrapolation methods and different basis sets (aug-cc-pVDZ - aug-cc-pVTZ, aug-cc-pVTZ - aug-cc-pVQZ, cc-pVTZ - cc-pVQZ) are utilized. The CCSD(T) correction term, determined as a difference between CCSD(T) and MP2 interaction energies, is evaluated with smaller basis sets (6-31G** and cc-pVDZ). Two sets of complex geometries were used, optimized or experimental ones. The JSCH-2005 benchmark set, which is now available to the chemical community, can be used for testing lower-level computational methods. For the first screening the smaller training set (S22) containing 22 model complexes can be recommended. In this case larger basis sets were used for extrapolation to the CBS limit and also CCSD(T) and counterpoise-corrected MP2 optimized geometries were sometimes adopted.

摘要

首次同时给出了100多个DNA碱基对、氨基酸对和模型复合物的MP2和CCSD(T)完全基组(CBS)极限相互作用能及几何结构。通过使用两点外推法进行到CBS极限的外推,并采用了不同的基组(aug-cc-pVDZ - aug-cc-pVTZ、aug-cc-pVTZ - aug-cc-pVQZ、cc-pVTZ - cc-pVQZ)。作为CCSD(T)与MP2相互作用能之差确定的CCSD(T)校正项,用较小的基组(6-31G**和cc-pVDZ)进行评估。使用了两组复合物几何结构,即优化的或实验得到的。现在化学界可获取的JSCH-2005基准集可用于测试较低水平的计算方法。对于首次筛选,可推荐包含22个模型复合物的较小训练集(S22)。在这种情况下,使用较大的基组进行到CBS极限的外推,并且有时采用CCSD(T)和经平衡校正的MP2优化几何结构。

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