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迈向希瓦氏菌的环境系统生物学

Towards environmental systems biology of Shewanella.

作者信息

Fredrickson James K, Romine Margaret F, Beliaev Alexander S, Auchtung Jennifer M, Driscoll Michael E, Gardner Timothy S, Nealson Kenneth H, Osterman Andrei L, Pinchuk Grigoriy, Reed Jennifer L, Rodionov Dmitry A, Rodrigues Jorge L M, Saffarini Daad A, Serres Margrethe H, Spormann Alfred M, Zhulin Igor B, Tiedje James M

机构信息

Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, USA.

出版信息

Nat Rev Microbiol. 2008 Aug;6(8):592-603. doi: 10.1038/nrmicro1947. Epub 2008 Jul 7.

DOI:10.1038/nrmicro1947
PMID:18604222
Abstract

Bacteria of the genus Shewanella are known for their versatile electron-accepting capacities, which allow them to couple the decomposition of organic matter to the reduction of the various terminal electron acceptors that they encounter in their stratified environments. Owing to their diverse metabolic capabilities, shewanellae are important for carbon cycling and have considerable potential for the remediation of contaminated environments and use in microbial fuel cells. Systems-level analysis of the model species Shewanella oneidensis MR-1 and other members of this genus has provided new insights into the signal-transduction proteins, regulators, and metabolic and respiratory subsystems that govern the remarkable versatility of the shewanellae.

摘要

希瓦氏菌属细菌以其多样的电子接受能力而闻名,这使它们能够将有机物的分解与在分层环境中遇到的各种终端电子受体的还原相耦合。由于其多样的代谢能力,希瓦氏菌对碳循环很重要,在污染环境修复和微生物燃料电池应用方面具有相当大的潜力。对模式菌种嗜铁钩端螺旋菌MR-1和该属其他成员进行的系统水平分析,为调控希瓦氏菌非凡多功能性的信号转导蛋白、调节因子以及代谢和呼吸子系统提供了新的见解。

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Towards environmental systems biology of Shewanella.迈向希瓦氏菌的环境系统生物学
Nat Rev Microbiol. 2008 Aug;6(8):592-603. doi: 10.1038/nrmicro1947. Epub 2008 Jul 7.
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Oxygen exposure promotes fuel diversity for Shewanella oneidensis microbial fuel cells.氧气暴露促进了嗜水气单胞菌微生物燃料电池的燃料多样性。
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Utilization of DNA as a sole source of phosphorus, carbon, and energy by Shewanella spp.: ecological and physiological implications for dissimilatory metal reduction.希瓦氏菌属将DNA作为磷、碳和能量的唯一来源的利用:异化金属还原的生态和生理意义
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Formate Metabolism in Shewanella oneidensis Generates Proton Motive Force and Prevents Growth without an Electron Acceptor.希瓦氏菌属中甲酸代谢产生质子动力并在没有电子受体的情况下阻止生长。
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Constraint-based model of Shewanella oneidensis MR-1 metabolism: a tool for data analysis and hypothesis generation.基于约束的希瓦氏菌属代谢模型:数据分析和假设生成的工具。
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Simultaneous analysis of physiological and electrical output changes in an operating microbial fuel cell with Shewanella oneidensis.对带有希瓦氏菌的运行中的微生物燃料电池的生理和电输出变化进行同步分析。
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