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本文引用的文献

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Gramene: development and integration of trait and gene ontologies for rice.Gramene:水稻性状和基因本体的开发与整合
Comp Funct Genomics. 2002;3(2):132-6. doi: 10.1002/cfg.156.
2
The Plant Ontology Consortium and plant ontologies.植物本体论联盟与植物本体论
Comp Funct Genomics. 2002;3(2):137-42. doi: 10.1002/cfg.154.
3
Toward the analysis of the petunia MADS box gene family by reverse and forward transposon insertion mutagenesis approaches: B, C, and D floral organ identity functions require SEPALLATA-like MADS box genes in petunia.利用反向和正向转座子插入诱变方法分析矮牵牛MADS盒基因家族:矮牵牛中B、C和D类花器官特征功能需要类SEPALLATA的MADS盒基因。
Plant Cell. 2003 Nov;15(11):2680-93. doi: 10.1105/tpc.017376. Epub 2003 Oct 23.
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The role of phylogenetics in comparative genetics.系统发育学在比较遗传学中的作用。
Plant Physiol. 2003 Aug;132(4):1790-800. doi: 10.1104/pp.103.022509.
5
Tobacco to tomatoes: a phylogenetic perspective on fruit diversity in the Solanaceae.从烟草到番茄:茄科果实多样性的系统发育视角
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Plant systematics in the age of genomics.基因组学时代的植物系统学
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Petunia Ap2-like genes and their role in flower and seed development.矮牵牛AP2样基因及其在花和种子发育中的作用。
Plant Cell. 2001 Feb;13(2):229-44. doi: 10.1105/tpc.13.2.229.
8
The importance of being earnest: what, if anything, constitutes a "specimen examined?".《认真的重要性》:究竟什么构成了“已检查样本”?
Mol Phylogenet Evol. 2000 Oct;17(1):129-32. doi: 10.1006/mpev.2000.0737.

茄科——将基因组学与生物多样性相联系的一个模型。

Solanaceae--a model for linking genomics with biodiversity.

作者信息

Knapp Sandra, Bohs Lynn, Nee Michael, Spooner David M

机构信息

Department of Botany, Natural History Museum, Cromwell Road, London SW7 5BD, UK.

出版信息

Comp Funct Genomics. 2004;5(3):285-91. doi: 10.1002/cfg.393.

DOI:10.1002/cfg.393
PMID:18629162
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2447452/
Abstract

Recent progress in understanding the phylogeny of the economically important plant family Solanaceae makes this an ideal time to develop models for linking the new data on plant genomics with the huge diversity of naturally occurring species in the family. Phylogenetics provides the framework with which to investigate these linkages but, critically, good species-level descriptive resources for the Solanaceae community are currently missing. Phylogeny in the family as a whole is briefly reviewed, and the new NSF Planetary Biodiversity Inventories project 'PBI: Solanum-a worldwide treatment' is described. The aims of this project are to provide species-level information across the global scope of the genus Solanum and to make this available over the Internet. The project is in its infancy, but will make available nomenclatural information, descriptions, keys and illustrative material for all of the approximately 1500 species of Solanum. With this project, the opportunity of linking valid, up-to-date taxonomic information about wild species of Solanum with the genomic information being generated about the economically important species of the genus (potato, tomato and eggplant) can be realized. The phylogenetic framework in which the PBI project is set is also of enormous potential benefit to other workers on Solanum. The community of biologists working with Solanaceae has a unique opportunity to effectively link genomics and taxonomy for better understanding of this important family, taking plant biology to a new level for the next century.

摘要

在理解经济上重要的茄科植物系统发育方面的最新进展,使得当下成为开发模型的理想时机,该模型用于将植物基因组学的新数据与茄科中自然存在的物种的巨大多样性联系起来。系统发育学提供了研究这些联系的框架,但至关重要的是,目前缺少针对茄科群落的良好的物种水平描述资源。本文简要回顾了整个茄科的系统发育,并描述了美国国家科学基金会新的行星生物多样性清单项目“PBI:茄属——全球研究”。该项目的目标是在全球范围内提供茄属物种水平的信息,并通过互联网提供这些信息。该项目尚处于起步阶段,但将提供约1500种茄属植物的命名信息、描述、检索表和说明材料。通过这个项目,可以实现将关于茄属野生种的有效、最新分类信息与正在生成的关于该属经济重要物种(马铃薯、番茄和茄子)的基因组信息联系起来的机会。PBI项目所处的系统发育框架对其他从事茄属研究的人员也具有巨大的潜在益处。从事茄科研究的生物学家群体有一个独特的机会,可以有效地将基因组学和分类学联系起来,以便更好地理解这个重要的科,在下个世纪将植物生物学提升到一个新水平。