The capillarity picture and the kinetics of one-dimensional protein folding.
作者信息
Ferreiro Diego U, Wolynes Peter G
机构信息
Department of Chemistry and Biochemistry and the Center for Theoretical Biological Physics, University of California at San Diego, 9500 Gilman Drive, La Jolla, CA 92093-0371, USA.
出版信息
Proc Natl Acad Sci U S A. 2008 Jul 22;105(29):9853-4. doi: 10.1073/pnas.0805287105. Epub 2008 Jul 16.
Abstract
摘要
相似文献
1
The capillarity picture and the kinetics of one-dimensional protein folding.一维蛋白质折叠的毛细作用图景与动力学
Proc Natl Acad Sci U S A. 2008 Jul 22;105(29):9853-4. doi: 10.1073/pnas.0805287105. Epub 2008 Jul 16.
2
Shifting transition states in the unfolding of a large ankyrin repeat protein.大型锚蛋白重复序列蛋白展开过程中的转变过渡态。
Proc Natl Acad Sci U S A. 2008 Jul 22;105(29):9982-7. doi: 10.1073/pnas.0705300105. Epub 2008 Jul 16.
3
Folding and unfolding mechanism of highly stable full-consensus ankyrin repeat proteins.高度稳定的完全一致锚蛋白重复序列蛋白的折叠与去折叠机制。
J Mol Biol. 2008 Feb 8;376(1):241-57. doi: 10.1016/j.jmb.2007.11.046. Epub 2007 Nov 22.
4
Rerouting the folding pathway of the Notch ankyrin domain by reshaping the energy landscape.通过重塑能量景观来重新引导Notch锚蛋白结构域的折叠途径。
J Am Chem Soc. 2008 Apr 30;130(17):5681-8. doi: 10.1021/ja0763201. Epub 2008 Apr 9.
5
Folding landscapes of ankyrin repeat proteins: experiments meet theory.锚蛋白重复序列蛋白的折叠景观：实验与理论的交汇
Curr Opin Struct Biol. 2008 Feb;18(1):27-34. doi: 10.1016/j.sbi.2007.12.004.
6
Folding kinetics of the cooperatively folded subdomain of the IκBα ankyrin repeat domain.IκBα 锚蛋白重复结构域协同折叠亚结构域的折叠动力学。
J Mol Biol. 2011 Apr 22;408(1):163-76. doi: 10.1016/j.jmb.2011.02.021. Epub 2011 Feb 15.
7
The energy landscape of modular repeat proteins: topology determines folding mechanism in the ankyrin family.模块化重复蛋白的能量景观：拓扑结构决定锚蛋白家族的折叠机制。
J Mol Biol. 2005 Dec 2;354(3):679-92. doi: 10.1016/j.jmb.2005.09.078. Epub 2005 Oct 13.
8
Large Ankyrin repeat proteins are formed with similar and energetically favorable units.大锚蛋白重复蛋白由相似且能量有利的结构域形成。
PLoS One. 2020 Jun 24;15(6):e0233865. doi: 10.1371/journal.pone.0233865. eCollection 2020.
9
A minimum folding unit in the ankyrin repeat protein p16(INK4).锚蛋白重复序列蛋白p16（INK4）中的最小折叠单元。
J Mol Biol. 2000 Jun 16;299(4):1121-32. doi: 10.1006/jmbi.2000.3803.
10
Modulation of folding kinetics of repeat proteins: interplay between intra- and interdomain interactions.调节重复蛋白的折叠动力学：结构域内和结构域间相互作用的相互影响。
Biophys J. 2012 Oct 3;103(7):1555-65. doi: 10.1016/j.bpj.2012.08.018. Epub 2012 Oct 2.
引用本文的文献
1
The mechanism of allosteric regulation of calcium-independent phospholipase A by ATP and calmodulin binding to the ankyrin domain.ATP 和钙调蛋白结合到锚蛋白结构域对钙非依赖性磷脂酶 A 的变构调节的机制。
Proc Natl Acad Sci U S A. 2024 Nov 26;121(48):e2411539121. doi: 10.1073/pnas.2411539121. Epub 2024 Nov 19.
2
Evolution and folding of repeat proteins.重复蛋白的进化和折叠。
Proc Natl Acad Sci U S A. 2022 Aug 2;119(31):e2204131119. doi: 10.1073/pnas.2204131119. Epub 2022 Jul 29.
3
Large Ankyrin repeat proteins are formed with similar and energetically favorable units.大锚蛋白重复蛋白由相似且能量有利的结构域形成。
PLoS One. 2020 Jun 24;15(6):e0233865. doi: 10.1371/journal.pone.0233865. eCollection 2020.
4
PyFolding: Open-Source Graphing, Simulation, and Analysis of the Biophysical Properties of Proteins.PyFolding：开源蛋白质生物物理性质的绘图、模拟和分析。
Biophys J. 2018 Feb 6;114(3):516-521. doi: 10.1016/j.bpj.2017.11.3779.
5
Detailing Protein Landscapes under Pressure.详述压力下的蛋白质景观
Biophys J. 2016 Dec 6;111(11):2339-2341. doi: 10.1016/j.bpj.2016.10.038.
6
Structural and Energetic Characterization of the Ankyrin Repeat Protein Family.锚蛋白重复序列蛋白家族的结构与能量特征
PLoS Comput Biol. 2015 Dec 21;11(12):e1004659. doi: 10.1371/journal.pcbi.1004659. eCollection 2015 Dec.
7
Capturing coevolutionary signals inrepeat proteins.捕捉重复蛋白中的协同进化信号。
BMC Bioinformatics. 2015 Jul 2;16:207. doi: 10.1186/s12859-015-0648-3.
8
Folding pathway of a multidomain protein depends on its topology of domain connectivity.多结构域蛋白质的折叠途径取决于其结构域连接的拓扑结构。
Proc Natl Acad Sci U S A. 2014 Nov 11;111(45):15969-74. doi: 10.1073/pnas.1406244111. Epub 2014 Sep 29.
9
Frustration in biomolecules.生物分子中的挫折感。
Q Rev Biophys. 2014 Nov;47(4):285-363. doi: 10.1017/S0033583514000092. Epub 2014 Sep 16.
10
Direct observation of parallel folding pathways revealed using a symmetric repeat protein system.利用对称重复蛋白系统揭示平行折叠途径的直接观察。
Biophys J. 2014 Jul 1;107(1):220-32. doi: 10.1016/j.bpj.2014.04.058.
本文引用的文献
1
Shifting transition states in the unfolding of a large ankyrin repeat protein.大型锚蛋白重复序列蛋白展开过程中的转变过渡态。
Proc Natl Acad Sci U S A. 2008 Jul 22;105(29):9982-7. doi: 10.1073/pnas.0705300105. Epub 2008 Jul 16.
2
Pre-folding IkappaBalpha alters control of NF-kappaB signaling.预折叠的IκBα改变了对NF-κB信号传导的控制。
J Mol Biol. 2008 Jun 27;380(1):67-82. doi: 10.1016/j.jmb.2008.02.053. Epub 2008 Mar 4.
3
The energy landscapes of repeat-containing proteins: topology, cooperativity, and the folding funnels of one-dimensional architectures.含重复序列蛋白质的能量景观：拓扑结构、协同性及一维结构的折叠漏斗
PLoS Comput Biol. 2008 May 16;4(5):e1000070. doi: 10.1371/journal.pcbi.1000070.
4
Folding landscapes of ankyrin repeat proteins: experiments meet theory.锚蛋白重复序列蛋白的折叠景观：实验与理论的交汇
Curr Opin Struct Biol. 2008 Feb;18(1):27-34. doi: 10.1016/j.sbi.2007.12.004.
5
Folding and unfolding mechanism of highly stable full-consensus ankyrin repeat proteins.高度稳定的完全一致锚蛋白重复序列蛋白的折叠与去折叠机制。
J Mol Biol. 2008 Feb 8;376(1):241-57. doi: 10.1016/j.jmb.2007.11.046. Epub 2007 Nov 22.
6
Coarse-grained models of protein folding: toy models or predictive tools?蛋白质折叠的粗粒度模型：玩具模型还是预测工具？
Curr Opin Struct Biol. 2008 Feb;18(1):10-5. doi: 10.1016/j.sbi.2007.10.005. Epub 2007 Dec 21.
7
Localizing frustration in native proteins and protein assemblies.在天然蛋白质和蛋白质组装体中定位挫折感。
Proc Natl Acad Sci U S A. 2007 Dec 11;104(50):19819-24. doi: 10.1073/pnas.0709915104. Epub 2007 Dec 5.
8
Repeat-protein folding: new insights into origins of cooperativity, stability, and topology.重复蛋白折叠：对协同性、稳定性和拓扑结构起源的新见解
Arch Biochem Biophys. 2008 Jan 1;469(1):83-99. doi: 10.1016/j.abb.2007.08.034. Epub 2007 Sep 15.
9
The plastic landscape of repeat proteins.重复蛋白的可塑性景观。
Proc Natl Acad Sci U S A. 2007 May 8;104(19):7735-6. doi: 10.1073/pnas.0702682104. Epub 2007 May 3.
10
Probing a moving target with a plastic unfolding intermediate of an ankyrin-repeat protein.用锚蛋白重复序列蛋白的塑料展开中间体探测移动目标。
Proc Natl Acad Sci U S A. 2007 May 8;104(19):7863-8. doi: 10.1073/pnas.0610315104. Epub 2007 May 2.
Zotero 插件