Sircah：一种用于检测和可视化可变转录本的工具。
Sircah: a tool for the detection and visualization of alternative transcripts.
作者信息
Harrington Eoghan D, Bork Peer
机构信息
Structural and Computational Biology Unit, European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany.
出版信息
Bioinformatics. 2008 Sep 1;24(17):1959-60. doi: 10.1093/bioinformatics/btn361. Epub 2008 Jul 17.
UNLABELLED
Sircah is a flexible tool for the detection, analysis and visualization of alternative transcripts. It takes as input gene models or spliced alignments and creates a database of alternative transcription events: alternative transcription initiation and polyadenylation, alternative 3' and 5' splice-site usage, skipped exons and retained introns. The results can be visualized in a variety of ways, allowing the creation of publication quality images.
AVAILABILITY
The Sircah is available for download under a creative commons license along with additional documentation and a tutorial from http://www.bork.embl.de/Sircah.
未标注
Sircah是一种用于检测、分析和可视化可变转录本的灵活工具。它以基因模型或剪接比对作为输入，并创建一个可变转录事件数据库：可变转录起始和聚腺苷酸化、可变3'和5'剪接位点使用、外显子跳跃和内含子保留。结果可以通过多种方式进行可视化，从而创建具有发表质量的图像。
可用性
Sircah可根据知识共享许可协议进行下载，同时还可从http://www.bork.embl.de/Sircah获取其他文档和教程。
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