Neumann Marcus A
Avant-garde Materials Simulation, 30b rue du vieil Abreuvoir, 78100 St-Germain-en-Laye, France.
J Phys Chem B. 2008 Aug 14;112(32):9810-29. doi: 10.1021/jp710575h. Epub 2008 Jul 22.
A general procedure is presented to derive a complete set of force-field parameters for flexible molecules in the crystalline state on a case-by-case basis. The force-field parameters are fitted to the electrostatic potential as well as to accurate energies and forces generated by means of a hybrid method that combines solid-state density functional theory (DFT) calculations with an empirical van der Waals correction. All DFT calculations are carried out with the VASP program. The mathematical structure of the force field, the generation of reference data, the choice of the figure of merit, the optimization algorithm, and the parameter-refinement strategy are discussed in detail. The approach is applied to cyclohexane-1,4-dione, a small flexible ring. The tailor-made force field obtained for cyclohexane-1,4-dione is used to search for low-energy crystal packings in all 230 space groups with one molecule per asymmetric unit, and the most stable crystal structures are reoptimized in a second step with the hybrid method. The experimental crystal structure is found as the most stable predicted crystal structure both with the tailor-made force field and the hybrid method. The same methodology has also been applied successfully to the four compounds of the fourth CCDC blind test on crystal-structure prediction. For the five aforementioned compounds, the root-mean-square deviations between lattice energies calculated with the tailor-made force fields and the hybrid method range from 0.024 to 0.053 kcal/mol per atom around an average value of 0.034 kcal/mol per atom.
本文提出了一种通用程序,可逐案推导结晶态柔性分子的完整力场参数集。力场参数通过一种混合方法拟合静电势以及精确的能量和力,该混合方法将固态密度泛函理论(DFT)计算与经验范德华修正相结合。所有DFT计算均使用VASP程序进行。详细讨论了力场的数学结构、参考数据的生成、品质因数的选择、优化算法和参数细化策略。该方法应用于环己烷-1,4-二酮,一种小的柔性环。为环己烷-1,4-二酮获得的定制力场用于在所有230个空间群中搜索低能晶体堆积,每个不对称单元有一个分子,并且在第二步中使用混合方法对最稳定的晶体结构进行重新优化。无论是使用定制力场还是混合方法,实验晶体结构都被发现是预测的最稳定晶体结构。相同的方法也已成功应用于晶体结构预测的第四次剑桥晶体学数据中心(CCDC)盲测中的四种化合物。对于上述五种化合物,使用定制力场和混合方法计算的晶格能量之间的均方根偏差在每个原子0.024至0.053千卡/摩尔之间,平均值为每个原子0.034千卡/摩尔。