Department of Physics and Astronomy, University of Delaware , Newark, Delaware 19716, United States.
Acc Chem Res. 2014 Nov 18;47(11):3266-74. doi: 10.1021/ar500275m. Epub 2014 Oct 29.
Until recently, it had been impossible to predict structures of molecular crystals just from the knowledge of the chemical formula for the constituent molecule(s). A solution of this problem has been achieved using intermolecular force fields computed from first principles. These fields were developed by calculating interaction energies of molecular dimers and trimers using an ab initio method called symmetry-adapted perturbation theory (SAPT) based on density-functional theory (DFT) description of monomers [SAPT(DFT)]. For clusters containing up to a dozen or so atoms, interaction energies computed using SAPT(DFT) are comparable in accuracy to the results of the best wave function-based methods, whereas the former approach can be applied to systems an order of magnitude larger than the latter. In fact, for monomers with a couple dozen atoms, SAPT(DFT) is about equally time-consuming as the supermolecular DFT approach. To develop a force field, SAPT(DFT) calculations are performed for a large number of dimer and possibly also trimer configurations (grid points in intermolecular coordinates), and the interaction energies are then fitted by analytic functions. The resulting force fields can be used to determine crystal structures and properties by applying them in molecular packing, lattice energy minimization, and molecular dynamics calculations. In this way, some of the first successful determinations of crystal structures were achieved from first principles, with crystal densities and lattice parameters agreeing with experimental values to within about 1%. Crystal properties obtained using similar procedures but empirical force fields fitted to crystal data have typical errors of several percent due to low sensitivity of empirical fits to interactions beyond those of the nearest neighbors. The first-principles approach has additional advantages over the empirical approach for notional crystals and cocrystals since empirical force fields can only be extrapolated to such cases. As an alternative to applying SAPT(DFT) in crystal structure calculations, one can use supermolecular DFT interaction energies combined with scaled dispersion energies computed from simple atom-atom functions, that is, use the so-called DFT+D approach. Whereas the standard DFT methods fail for intermolecular interactions, DFT+D performs reasonably well since the dispersion correction is used not only to provide the missing dispersion contribution but also to fix other deficiencies of DFT. The latter cancellation of errors is unphysical and can be avoided by applying the so-called dispersionless density functional, dlDF. In this case, the dispersion energies are added without any scaling. The dlDF+D method is also one of the best performing DFT+D methods. The SAPT(DFT)-based approach has been applied so far only to crystals with rigid monomers. It can be extended to partly flexible monomers, that is, to monomers with only a few internal coordinates allowed to vary. However, the costs will increase relative to rigid monomer cases since the number of grid points increases exponentially with the number of dimensions. One way around this problem is to construct force fields with approximate couplings between inter- and intramonomer degrees of freedom. Another way is to calculate interaction energies (and possibly forces) "on the fly", i.e., in each step of lattice energy minimization procedure. Such an approach would be prohibitively expensive if it replaced analytic force fields at all stages of the crystal predictions procedure, but it can be used to optimize a few dozen candidate structures determined by other methods.
直到最近,仅仅根据组成分子的化学式来预测分子晶体的结构仍然是不可能的。使用从第一性原理计算的分子间力场解决了这个问题。这些场是通过使用基于密度泛函理论 (DFT) 的单体对称性自适应微扰理论 (SAPT) 计算二聚体和三聚体的相互作用能来开发的 [SAPT(DFT)]。对于包含十几个原子左右的簇,使用 SAPT(DFT) 计算的相互作用能与最佳波函数方法的结果一样准确,而前者的方法可以应用于比后者大一个数量级的系统。事实上,对于具有十几个原子的单体,SAPT(DFT) 的计算时间与超分子 DFT 方法大致相同。为了开发力场,对大量二聚体和可能的三聚体构象(分子间坐标中的网格点)进行 SAPT(DFT) 计算,然后通过解析函数拟合相互作用能。所得的力场可用于通过在分子堆积、晶格能最小化和分子动力学计算中应用它们来确定晶体结构和性质。通过这种方式,一些晶体结构的首次成功确定是从第一性原理出发的,晶体密度和晶格参数与实验值的误差在 1%左右。使用类似程序但通过晶体数据拟合的经验力场获得的晶体性质由于经验拟合对最近邻以外的相互作用的敏感性较低,因此通常存在百分之几的误差。与经验方法相比,第一性原理方法对于名义晶体和共晶体具有额外的优势,因为经验力场只能外推到这些情况。作为在晶体结构计算中应用 SAPT(DFT) 的替代方法,可以使用超分子 DFT 相互作用能与从简单的原子-原子函数计算的缩放色散能相结合,即使用所谓的 DFT+D 方法。尽管标准 DFT 方法对分子间相互作用失效,但 DFT+D 表现良好,因为色散校正不仅用于提供缺失的色散贡献,还用于修复 DFT 的其他缺陷。后者对错误的取消是不合理的,可以通过应用所谓的无弥散密度泛函,dlDF 来避免。在这种情况下,色散能不加任何缩放即可添加。dlDF+D 方法也是性能最好的 DFT+D 方法之一。到目前为止,基于 SAPT(DFT) 的方法仅应用于刚性单体的晶体。它可以扩展到部分柔性单体,即允许只有少数内部坐标变化的单体。然而,相对于刚性单体情况,成本会增加,因为网格点的数量随维度的数量呈指数增长。解决此问题的一种方法是构建具有介内和内单体自由度之间近似耦合的力场。另一种方法是“即时”计算相互作用能(和可能的力),即在晶格能最小化过程的每一步。如果这种方法在晶体预测过程的所有阶段都取代解析力场,那么它将非常昂贵,但它可以用于优化通过其他方法确定的几十个候选结构。