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对细胞周期停滞和细胞凋亡中p73相互作用进行编目和组织。

Cataloging and organizing p73 interactions in cell cycle arrest and apoptosis.

作者信息

Tozluoğlu Melda, Karaca Ezgi, Haliloglu Turkan, Nussinov Ruth

机构信息

Polymer Research Center and Chemical Engineering Department, Bogazici University, Bebek-Istanbul 80815, Turkey.

出版信息

Nucleic Acids Res. 2008 Sep;36(15):5033-49. doi: 10.1093/nar/gkn481. Epub 2008 Jul 26.

Abstract

We have compiled the p73-mediated cell cycle arrest and apoptosis pathways. p73 is a member of the p53 family, consisting of p53, p63 and p73. p73 exists in several isoforms, presenting different domain structures. p73 functions not only as a tumor suppressor in apoptosis but also as differentiator in embryo development. p53 mutations are responsible for half of the human cancers; p73 can partially substitute mutant p53 as tumor suppressor. The pathways we assembled create a p73-centered network consisting of 53 proteins and 176 interactions. We clustered our network into five functional categories: Upregulation, Activation, Suppression, Transcriptional Activity and Degradation. Our literature searches led to discovering proteins (c-Jun and pRb) with apparent opposing functional effects; these indicate either currently missing proteins and interactions or experimental misidentification or functional annotation. For convenience, here we present the p73 network using the molecular interaction map (MIM) notation. The p73 MIM is unique amongst MIMs, since it further implements detailed domain features. We highlight shared pathways between p53 and p73. We expect that the compiled and organized network would be useful to p53 family-based studies.

摘要

我们已经汇编了p73介导的细胞周期停滞和凋亡途径。p73是p53家族的成员之一,该家族还包括p53、p63和p73。p73以多种亚型存在,呈现出不同的结构域结构。p73不仅在凋亡过程中作为肿瘤抑制因子发挥作用,还在胚胎发育中作为分化因子发挥作用。p53突变导致了一半的人类癌症;p73可以部分替代突变的p53作为肿瘤抑制因子。我们组装的途径创建了一个以p73为中心的网络,该网络由53种蛋白质和176个相互作用组成。我们将我们的网络聚类为五个功能类别:上调、激活、抑制、转录活性和降解。我们的文献检索导致发现了具有明显相反功能效应的蛋白质(c-Jun和pRb);这些表明要么目前缺少蛋白质和相互作用,要么存在实验错误识别或功能注释。为了方便起见,这里我们使用分子相互作用图(MIM)符号来展示p73网络。p73 MIM在MIM中是独特的,因为它进一步实现了详细的结构域特征。我们强调了p53和p73之间的共享途径。我们期望这个汇编和组织好的网络对基于p53家族的研究有用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4dd1/2528188/df85f168df5d/gkn481f1.jpg

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