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来自水稻白叶枯病菌的胱硫醚γ-裂合酶样蛋白XometC的表达、结晶及初步X射线晶体学分析

Expression, crystallization and preliminary X-ray crystallographic analysis of XometC, a cystathionine gamma-lyase-like protein from Xanthomonas oryzae pv. oryzae.

作者信息

Ngo Phuong Thuy Ho, Kim Jin Kwang, Kim Hyesoon, Jung Junho, Ahn Yeh Jin, Kim Jeong Gu, Lee Byoung Moo, Kang Hee Wan, Kang Lin Woo

机构信息

Department of Advanced Technology Fusion, Konkuk University, Hwayang-dong, Gwangjin-gu, Seoul 143-701, Republic of Korea.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 Aug 1;64(Pt 8):750-3. doi: 10.1107/S1744309108021155. Epub 2008 Jul 31.

DOI:10.1107/S1744309108021155
PMID:18678949
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2494973/
Abstract

Xanthomonas oryzae pv. oryzae (Xoo) causes bacterial blight of rice (Oryza sativa L.), one of the most devastating diseases of rice in most rice-growing countries. XometC, a cystathionine gamma-lyase (CGL) like protein that is an antibacterial drug-target protein against Xoo, was cloned, expressed, purified and crystallized. CGL catalyzes the second step in the reverse-transsulfuration pathway, which is essential for the metabolic interconversion of the sulfur-containing amino acids cysteine and methionine. Crystals of two different shapes, plate-shaped and pyramid-shaped, diffracted to 2.9 and 3.2 A resolution and belonged to the primitive orthogonal space group P2(1)2(1)2(1) and the tetragonal space group P4(1) (or P4(3)), with unit-cell parameters a = 73.0, b = 144.9, c = 152.3 A and a = b = 78.2, c = 300.7 A, respectively. For the P2(1)2(1)2(1) crystals, three or four monomers exist in the asymmetric unit with a corresponding V(M) of 3.02 or 2.26 A(3) Da(-1) and a solvent content of 59.3 or 45.7%. For the P4(1) (or P4(3)) crystals, four or five monomers exist in the asymmetric unit with a corresponding V(M) of 2.59 or 2.09 A(3) Da(-1) and a solvent content of 52.5 or 40.6%.

摘要

水稻白叶枯病菌(Xanthomonas oryzae pv. oryzae,Xoo)引发水稻白叶枯病,该病是多数水稻种植国家中最具毁灭性的水稻病害之一。XometC是一种类似于胱硫醚γ-裂解酶(CGL)的蛋白质,是针对Xoo的一种抗菌药物靶点蛋白,已被克隆、表达、纯化并结晶。CGL催化反向转硫途径中的第二步,这对于含硫氨基酸半胱氨酸和蛋氨酸的代谢相互转化至关重要。两种不同形状的晶体,板状和金字塔状,衍射分辨率分别为2.9 Å和3.2 Å,分别属于原始正交空间群P2(1)2(1)2(1)和四方空间群P4(1)(或P4(3)),晶胞参数分别为a = 73.0,b = 144.9,c = 152.3 Å和a = b = 78.2,c = 300.7 Å。对于P2(1)2(1)2(1)晶体,不对称单元中存在三个或四个单体,相应的V(M)为3.02或2.26 ų Da⁻¹,溶剂含量为59.3%或45.7%。对于P4(1)(或P4(3))晶体,不对称单元中存在四个或五个单体,相应的V(M)为2.59或2.09 ų Da⁻¹,溶剂含量为52.5%或40.6%。