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水合作用对亮氨酸脑啡肽构象行为影响的超分子研究。

A supermolecule study of the effect of hydration on the conformational behaviour of leucine-enkephalin.

作者信息

Demetropoulos I N, Gresh N

机构信息

Department of Chemistry, University of Ioannina, Greece.

出版信息

J Comput Aided Mol Des. 1991 Apr;5(2):81-94. doi: 10.1007/BF00129748.

Abstract

A theoretical conformational study was performed on leu-enkephalin in its zwitterionic form, both in vacuo and in the presence of a number, n, of up to 13 water molecules saturating its first hydration shell. The intramolecular energy of enkephalin as well as the intermolecular enkephalin-water and water-water interaction energies were computed with the SIBFA procedure (Sum of Interactions Between Fragments Ab initio computed), which uses additive ab initio multipole systematics and analytical formulas grounded on ab initio SCF computations. Energy minimizations were performed with a polyvalent minimizer, Merlin, with which three distinct derivative and three distinct nonderivative minimizers can be activated in a sequential fashion. Eight different candidate conformations of enkephalin were used as starting points. These conformations are either those found in distinct X-ray structures, or those proposed on the basis of theoretical computations by other authors. In the absence of hydration, they converged towards distinct folded energy-minima, the best four ones being separated by an energy gap of 8.7 kcal/mol. In marked contrast, with up to n = 13, the energetical separation between the six best conformers narrowed down to congruent to 4 kcal/mol. They can be characterized by: (a) either a direct or a water-mediated ammonium-carboxylate interaction; b) either a close proximity (as in morphine) or a large separation between the aromatic rings of Tyr and Phe (intercenter separations of congruent to 4.5 A and congruent to 10.5 A, respectively), with each of the four mutual combinations of (a) and (b) being represented.

摘要

对亮氨酸脑啡肽的两性离子形式进行了理论构象研究,研究分别在真空条件下以及存在多达13个水分子使其第一水化层饱和的情况下进行。使用SIBFA程序(从头计算片段间相互作用总和)计算了脑啡肽的分子内能量以及脑啡肽 - 水和水 - 水的分子间相互作用能,该程序使用加性从头多极系统学和基于从头自洽场计算的解析公式。使用多价极小化器Merlin进行能量最小化,通过它可以依次激活三种不同的导数极小化器和三种不同的非导数极小化器。以脑啡肽的八种不同候选构象作为起始点。这些构象要么是在不同的X射线结构中发现的,要么是其他作者基于理论计算提出的。在没有水合作用的情况下,它们收敛到不同的折叠能量极小值,其中最好的四个能量极小值之间的能量差距为8.7千卡/摩尔。与之形成鲜明对比的是,当水分子数n高达13时,六个最佳构象体之间的能量间隔缩小到约4千卡/摩尔。它们的特征可以是:(a) 直接的或通过水介导的铵 - 羧酸盐相互作用;(b) 酪氨酸和苯丙氨酸的芳香环之间要么紧密相邻(如在吗啡中)要么相距很远(中心间距分别约为4.5埃和约10.5埃),(a) 和 (b) 的四种相互组合均有体现。

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