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Solitary waves in twist-opening models of DNA dynamics.

作者信息

Gaeta Giuseppe, Venier Laura

机构信息

Dipartimento di Matematica, Università di Milano, via Saldini 50, Milano, Italy.

出版信息

Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Jul;78(1 Pt 1):011901. doi: 10.1103/PhysRevE.78.011901. Epub 2008 Jul 7.

Abstract

We analyze traveling solitary wave solutions in the Barbi-Cocco-Peyrard twist-opening model of nonlinear DNA dynamics. We identify conditions, involving an interplay of physical parameters and asymptotic behavior, for such solutions to exist, and provide first-order ordinary differential equations whose solutions give the required solitary waves; these are not solvable in analytical terms, but are easily integrated numerically. The conditions for existence of solitary waves are not satisfied for trivial asymptotic behavior and physical values of the parameters, i.e., the Barbi-Cocco-Peyrard model admits only solitary wave solutions that entail a global modification of the molecule; this is compared with the situation met in another recently formulated class of DNA models with two degrees of freedom per site.

摘要

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