Roten Linda T, Johnson Matthew P, Forsmo Siri, Fitzpatrick Elizabeth, Dyer Thomas D, Brennecke Shaun P, Blangero John, Moses Eric K, Austgulen Rigmor
Department of Cancer Research and Molecular Medicine, Norwegian University of Science and Technology (NTNU), Trondheim, Norway.
Eur J Hum Genet. 2009 Feb;17(2):250-7. doi: 10.1038/ejhg.2008.158. Epub 2008 Sep 10.
Genome-wide scans in Icelandic, Australian/New Zealand and Finnish pedigrees have provided evidence for maternal susceptibility loci for pre-eclampsia on chromosome 2, although at different positions (Iceland: 2p13 and 2q23, Australia/New Zealand: 2p11-12 and 2q22, Finland: 2p25). In this project, a large population-based (n=65 000) nested case-control study was performed in Norway to further explore the association between positional candidate genes on chromosome 2q and pre-eclampsia, using single-nucleotide polymorphisms (SNPs). DNA samples from 1139 cases (women with one or more pre-eclamptic pregnancies) and 2269 controls (women with normal pregnancies) were genotyped using the Applied Biosystems SNPlex high-throughput genotyping assay. In total, 71 SNPs within positional candidate genes at 2q22-23 locus on chromosome 2 were genotyped in each individual. Genotype data were statistically analysed with the sequential oligogenic linkage analysis routines (SOLAR) computer package. Nominal evidence of association was found for six SNPs (rs1014064, rs17742134, rs1424941, rs2161983, rs3768687 and rs3764955) within the activin receptor type 2 gene (ACVR2A) (all P-values <0.05). The non-independence of statistical tests due to linkage disequilibrium between SNPs at a false discovery rate of 5% identifies our four best SNPs (rs1424941, rs1014064, rs2161983 and rs3768687) to remain statistically significant. The fact that populations with different ancestors (Iceland/Norway-Australia/New Zealand) demonstrate a common maternal pre-eclampsia susceptibility locus on chromosome 2q22-23, may suggest a general role of this locus, and possibly the ACVR2A gene, in pre-eclampsia pathogenesis.
对冰岛、澳大利亚/新西兰和芬兰的家系进行全基因组扫描,已为子痫前期的母体易感基因座提供了位于2号染色体上的证据,尽管位置不同(冰岛:2p13和2q23;澳大利亚/新西兰:2p11 - 12和2q22;芬兰:2p25)。在本项目中,挪威开展了一项基于大规模人群(n = 65000)的巢式病例对照研究,以使用单核苷酸多态性(SNP)进一步探究2号染色体上位置候选基因与子痫前期之间的关联。采用应用生物系统公司的SNPlex高通量基因分型检测法,对1139例病例(有一次或多次子痫前期妊娠史的女性)和2269例对照(妊娠正常的女性)的DNA样本进行基因分型。总共对2号染色体2q22 - 23位点的位置候选基因内的71个SNP在每个个体中进行了基因分型。使用顺序寡基因连锁分析程序(SOLAR)计算机软件包对基因型数据进行统计分析。在激活素受体2型基因(ACVR2A)内发现6个SNP(rs1014064、rs17742134、rs1424941、rs2161983、rs3768687和rs3764955)有显著关联的初步证据(所有P值<0.05)。由于SNP之间的连锁不平衡导致统计检验不独立,在错误发现率为5%的情况下,确定我们的4个最佳SNP(rs1424941、rs1014064、rs2161983和rs3768687)仍具有统计学意义。不同祖先群体(冰岛/挪威 - 澳大利亚/新西兰)在2号染色体2q22 - 23上显示出共同的子痫前期母体易感基因座,这一事实可能表明该基因座以及可能的ACVR2A基因在子痫前期发病机制中具有普遍作用。