Lai Peter C, Bahl Gautam, Gremigni Maryse, Matarazzo Valery, Clot-Faybesse Olivier, Ronin Catherine, Crasto Chiquito J
Division of Natural Science, Mathematics, and Computing, Bard College at Simon's Rock, Great Barrington, MA, USA.
J Struct Funct Genomics. 2008 Dec;9(1-4):29-40. doi: 10.1007/s10969-008-9043-x. Epub 2008 Sep 19.
Human olfactory receptor, hOR17-210, is identified as a pseudogene in the human genome. Experimental data has shown however, that the gene product of frame-shifted, cloned hOR17-210 cDNA was able to bind an odorant-binding protein and is narrowly tuned for excitation by cyclic ketones. Supported by experimental results, we used the bioinformatics methods of sequence analysis (genome-wide and pair-wise), computational protein modeling and docking, to show that functionality in this receptor is retained due to sequence-structure features not previously observed in mammalian ORs. This receptor does not possess the first two transmembrane helical domains (of seven typically seen in GPCRs). It however, possesses an additional TM that has not been observed in other human olfactory receptors. By incorporating these novel structural features, we created two putative models for this receptor. We also docked odor ligands that were experimentally shown to bind hOR17-210. We show how and why structural modifications of OR17-210 do not hinder this receptor's functionality. Our studies reveal that novel gene rearrangements that result in sequence and structural diversity may have a bearing on OR and GPCR function and evolution.
人类嗅觉受体hOR17 - 210在人类基因组中被鉴定为假基因。然而,实验数据表明,经移码处理的克隆hOR17 - 210 cDNA的基因产物能够结合一种气味结合蛋白,并且对环状酮的激发具有狭窄的调谐范围。在实验结果的支持下,我们使用了序列分析(全基因组和两两比对)、计算蛋白质建模和对接等生物信息学方法,以表明该受体的功能由于在哺乳动物嗅觉受体中未曾观察到的序列 - 结构特征而得以保留。该受体不具备前两个跨膜螺旋结构域(G蛋白偶联受体通常具有的七个跨膜螺旋结构域中的前两个)。然而,它拥有一个在其他人类嗅觉受体中未观察到的额外跨膜结构域。通过纳入这些新颖的结构特征,我们为该受体创建了两个推测模型。我们还对接了经实验证明能与hOR17 - 210结合的气味配体。我们展示了OR17 - 210的结构修饰如何以及为何不会阻碍该受体的功能。我们的研究表明,导致序列和结构多样性的新型基因重排可能与嗅觉受体和G蛋白偶联受体的功能及进化有关。