de March Claire A, Kim Soo-Kyung, Antonczak Serge, Goddard William A, Golebiowski Jérôme
Institute of Chemistry-Nice, UMR 7272 CNRS-University Nice-Sophia Antipolis, Nice Cedex 2, 06108, France.
Materials and Process Simulation Center (MC139-74), California Institute of Technology, Pasadena, California, 91125.
Protein Sci. 2015 Sep;24(9):1543-8. doi: 10.1002/pro.2717. Epub 2015 Jun 22.
Odorant receptors (ORs) are the largest subfamily within class A G protein-coupled receptors (GPCRs). No experimental structural data of any OR is available to date and atomic-level insights are likely to be obtained by means of molecular modeling. In this article, we critically align sequences of ORs with those GPCRs for which a structure is available. Here, an alignment consistent with available site-directed mutagenesis data on various ORs is proposed. Using this alignment, the choice of the template is deemed rather minor for identifying residues that constitute the wall of the binding cavity or those involved in G protein recognition.
气味受体(ORs)是A类G蛋白偶联受体(GPCRs)中最大的亚家族。迄今为止,尚无任何气味受体的实验结构数据,通过分子建模可能会获得原子水平的见解。在本文中,我们严格地将气味受体的序列与那些已有结构的G蛋白偶联受体的序列进行比对。在此,我们提出了一种与各种气味受体上现有的定点诱变数据一致的比对方法。利用这种比对方法,对于识别构成结合腔壁的残基或参与G蛋白识别的残基而言,模板的选择被认为不太重要。