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哺乳动物进化中嗅觉受体基因的广泛扩增和缺失。

Extensive gains and losses of olfactory receptor genes in mammalian evolution.

机构信息

Department of Bioinformatics, Medical Research Institute, Tokyo Medical and Dental University, Tokyo, Japan.

出版信息

PLoS One. 2007 Aug 8;2(8):e708. doi: 10.1371/journal.pone.0000708.

Abstract

Odor perception in mammals is mediated by a large multigene family of olfactory receptor (OR) genes. The number of OR genes varies extensively among different species of mammals, and most species have a substantial number of pseudogenes. To gain some insight into the evolutionary dynamics of mammalian OR genes, we identified the entire set of OR genes in platypuses, opossums, cows, dogs, rats, and macaques and studied the evolutionary change of the genes together with those of humans and mice. We found that platypuses and primates have <400 functional OR genes while the other species have 800-1,200 functional OR genes. We then estimated the numbers of gains and losses of OR genes for each branch of the phylogenetic tree of mammals. This analysis showed that (i) gene expansion occurred in the placental lineage each time after it diverged from monotremes and from marsupials and (ii) hundreds of gains and losses of OR genes have occurred in an order-specific manner, making the gene repertoires highly variable among different orders. It appears that the number of OR genes is determined primarily by the functional requirement for each species, but once the number reaches the required level, it fluctuates by random duplication and deletion of genes. This fluctuation seems to have been aided by the stochastic nature of OR gene expression.

摘要

哺乳动物的嗅觉感知是由一大类嗅觉受体 (OR) 基因家族介导的。OR 基因的数量在不同的哺乳动物物种之间差异很大,大多数物种都有大量的假基因。为了深入了解哺乳动物 OR 基因的进化动态,我们鉴定了鸭嘴兽、负鼠、牛、狗、大鼠和猕猴中的全部 OR 基因,并与人类和小鼠的基因一起研究了这些基因的进化变化。我们发现,鸭嘴兽和灵长类动物有 <400 个功能性 OR 基因,而其他物种有 800-1,200 个功能性 OR 基因。然后,我们估计了哺乳动物系统发育树的每个分支上 OR 基因的获得和丢失数量。这项分析表明:(i) 在胎盘谱系每次与单孔目动物和有袋类动物分化后,基因就会发生扩张;(ii) 数百个 OR 基因的获得和丢失是以特定顺序发生的,使得不同目之间的基因库高度多样化。看来,OR 基因的数量主要由每个物种的功能需求决定,但一旦数量达到所需水平,基因就会通过随机复制和缺失而波动。这种波动似乎得到了 OR 基因表达的随机性的帮助。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5754/1933591/89ba82793b90/pone.0000708.g001.jpg

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