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具有稳定折叠的极短肽:基于色氨酸/色氨酸、色氨酸/阳离子和色氨酸/主链酰胺相互作用几何结构的相互关系构建

Very short peptides with stable folds: building on the interrelationship of Trp/Trp, Trp/cation, and Trp/backbone-amide interaction geometries.

作者信息

Eidenschink Lisa, Kier Brandon L, Huggins Kelly N L, Andersen Niels H

机构信息

Department of Chemistry, University of Washington, Seattle, Washington 98195, USA.

出版信息

Proteins. 2009 May 1;75(2):308-22. doi: 10.1002/prot.22240.

Abstract

By combining a favorable turn sequence with a turn flanking Trp/Trp interaction and a C-terminal H-bonding interaction between a backbone amide and an i-2 Trp ring, a particularly stable (DeltaG(U) > 7 kJ/mol) truncated hairpin, Ac-WI-(D-Pro-D-Asn)-KWTG-NH(2), results. In this construct and others with a W-(4-residue turn)-W motif in severely truncated hairpins, the C-terminal Trp is the edge residue in a well-defined face-to-edge (FtE) aryl/aryl interaction. Longer hairpins and those with six-residue turns retain the reversed "edge-to-face" (EtF) Trp/Trp geometry first observed for the trpzip peptides. Mutational studies suggest that the W-(4-residue turn)-W interaction provides at least 3 kJ/mol of stabilization in excess of that due to the greater beta-propensity of Trp. The pi-cation, and Trp/Gly-H(N) interactions have been defined. The latter can give rise to >3 ppm upfield shifts for the Gly-H(N) in -WX(n)G- units both in turns (n = 2) and at the C-termini (n = 1) of hairpins. Terminal YTG units result in somewhat smaller shifts (extrapolated to 2 ppm for 100% folding). In peptides with both the EtF and FtE W/W interaction geometries, Trp to Tyr mutations indicate that Trp is the preferred "face" residue in aryl/aryl pairings, presumably because of its greater pi basicity.

摘要

通过将有利的转角序列与位于转角侧翼的色氨酸/色氨酸相互作用以及主链酰胺与i - 2色氨酸环之间的C端氢键相互作用相结合,得到了一种特别稳定的(ΔG(U) > 7 kJ/mol)截短发夹结构,即Ac - WI - (D - Pro - D - Asn) - KWTG - NH₂。在这个构建体以及其他严重截短发夹中具有W - (4个残基转角) - W基序的构建体中,C端色氨酸是明确的面对面(FtE)芳基/芳基相互作用中的边缘残基。更长的发夹结构以及具有六个残基转角的结构保留了最初在trpzip肽中观察到的反向“边对面”(EtF)色氨酸/色氨酸几何结构。突变研究表明,W - (4个残基转角) - W相互作用提供的稳定性至少比由于色氨酸更大的β倾向性所导致的稳定性高出3 kJ/mol。已经确定了π - 阳离子和色氨酸/甘氨酸 - H(N)相互作用。后者可使 - WX(n)G - 单元中的甘氨酸 - H(N)在转角处(n = 2)和发夹的C端(n = 1)产生大于3 ppm的场向位移。末端YTG单元导致的位移稍小(外推至100%折叠时为2 ppm)。在同时具有EtF和FtE W/W相互作用几何结构的肽中,色氨酸到酪氨酸的突变表明,在芳基/芳基配对中色氨酸是首选的“面”残基,大概是因为其更大的π碱性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/824f/2656586/241c36a2a347/nihms-75508-f0001.jpg

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