Suppr超能文献

色氨酸拉链模体中 CH/π 相互作用的可调谐性,以稳定长 β-发夹肽的折叠。

Tunable CH/π Interactions within a Tryptophan Zipper Motif to Stabilize the Fold of Long β-Hairpin Peptides.

机构信息

Department of Chemistry and Biochemistry, Florida Atlantic University, Boca Raton, Florida 33431, United States.

Department of Chemistry, Indian Institute of Science Education and Research Pune, Pashan, Pune 411008, India.

出版信息

ACS Chem Biol. 2023 Dec 15;18(12):2555-2563. doi: 10.1021/acschembio.3c00553. Epub 2023 Nov 17.

Abstract

The tryptophan zipper (Trpzip) is an iconic folding motif of β-hairpin peptides capitalizing on two pairs of cross-strand tryptophans, each stabilized by an aromatic-aromatic stacking in an edge-to-face (EF) geometry. Yet, the origins and the contribution of this EF packing to the unique Trpzip stability remain poorly understood. To address this question of structure-stability relationship, a library of Trpzip hairpins was developed by incorporating readily accessible nonproteinogenic tryptophans of varying electron densities. We found that each EF geometry was, in fact, stabilized by an intricate combination of XH/π interactions. By tuning the π-electron density of Trp rings, CH/π interactions are strengthened to gain additional stability. On the contrary, our DFT calculations support the notion that Trp modulations are challenging due to their simultaneous paradoxical engagement as H-bond donors in CH/π and acceptors in NH/π interactions.

摘要

色氨酸拉链(Trpzip)是β发夹肽的标志性折叠基序,利用两对跨链色氨酸,每对都通过边缘到面(EF)几何结构中的芳族-芳族堆积稳定。然而,这种 EF 堆积对独特的 Trpzip 稳定性的起源和贡献仍知之甚少。为了解决结构稳定性关系的问题,通过引入易于获得的具有不同电子密度的非蛋白质色氨酸,开发了 Trpzip 发夹文库。我们发现,实际上,每个 EF 几何结构都是通过复杂的 XH/π 相互作用组合稳定的。通过调整色氨酸环的π电子密度,可以增强 CH/π 相互作用以获得额外的稳定性。相反,我们的 DFT 计算支持这样一种观点,即由于 Trp 调节同时作为 CH/π 中的 H 键供体和 NH/π 中的受体参与,因此具有挑战性。

相似文献

1
Tunable CH/π Interactions within a Tryptophan Zipper Motif to Stabilize the Fold of Long β-Hairpin Peptides.
ACS Chem Biol. 2023 Dec 15;18(12):2555-2563. doi: 10.1021/acschembio.3c00553. Epub 2023 Nov 17.
4
Tryptophan zippers: stable, monomeric beta -hairpins.
Proc Natl Acad Sci U S A. 2001 May 8;98(10):5578-83. doi: 10.1073/pnas.091100898. Epub 2001 May 1.
8
Minimization and optimization of designed beta-hairpin folds.
J Am Chem Soc. 2006 May 10;128(18):6101-10. doi: 10.1021/ja054971w.

引用本文的文献

1
Investigating the Site-Specific Impact of Fluorine Substitution on Aromatic Interactions in a Tryptophan Zipper Peptide.
Chemistry. 2025 Jul 17;31(40):e202501263. doi: 10.1002/chem.202501263. Epub 2025 Jun 29.
2
WDR5 Binding to Histone Serotonylation Is Driven by an Edge-Face Aromatic Interaction with Unexpected Electrostatic Effects.
J Am Chem Soc. 2024 Oct 9;146(40):27451-27459. doi: 10.1021/jacs.4c07277. Epub 2024 Sep 25.
3
De Novo Synthesis and Structural Elucidation of CDR-H3 Loop Mimics.
ACS Chem Biol. 2024 Jul 19;19(7):1583-1592. doi: 10.1021/acschembio.4c00236. Epub 2024 Jun 25.

本文引用的文献

1
Exploiting non-covalent interactions in selective carbohydrate synthesis.
Nat Rev Chem. 2021 Nov;5(11):792-815. doi: 10.1038/s41570-021-00324-y. Epub 2021 Oct 6.
2
The Role of Tryptophan in π Interactions in Proteins: An Experimental Approach.
J Am Chem Soc. 2022 Aug 3;144(30):13815-13822. doi: 10.1021/jacs.2c04986. Epub 2022 Jul 22.
3
The relative stability of trpzip1 and its mutants determined by computation and experiment.
RSC Adv. 2020 Feb 12;10(11):6520-6535. doi: 10.1039/d0ra00920b. eCollection 2020 Feb 7.
4
Direct evidence of edge-to-face CH/π interaction for PAR-1 thrombin receptor activation.
Bioorg Med Chem. 2021 Dec 1;51:116498. doi: 10.1016/j.bmc.2021.116498. Epub 2021 Nov 10.
5
Folding in Place: Design of β-Strap Motifs to Stabilize the Folding of Hairpins with Long Loops.
J Org Chem. 2021 Oct 1;86(19):13535-13547. doi: 10.1021/acs.joc.1c01442. Epub 2021 Sep 9.
7
CH-π interaction between cross-strand amino acid pairs stabilizes β-hairpins.
Chem Commun (Camb). 2020 Nov 19;56(92):14447-14450. doi: 10.1039/d0cc05653g.
8
Physical Mechanisms Governing Substituent Effects on Arene-Arene Interactions in a Protein Milieu.
J Phys Chem B. 2020 Jul 30;124(30):6529-6539. doi: 10.1021/acs.jpcb.0c03778. Epub 2020 Jul 20.
9
PI by NMR: Probing CH-π Interactions in Protein-Ligand Complexes by NMR Spectroscopy.
Angew Chem Int Ed Engl. 2020 Aug 24;59(35):14861-14868. doi: 10.1002/anie.202003732. Epub 2020 Jul 15.
10
Secondary Forces in Protein Folding.
ACS Chem Biol. 2019 Aug 16;14(8):1677-1686. doi: 10.1021/acschembio.9b00339. Epub 2019 Jun 19.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验